mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-owegwo2g because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:42:50,379 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:42:51,297 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:42:51,472 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:43:39,064 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:43:39,326 - cnv_pipe.batch.run_model - INFO - Processing cluster 548 with 197 probes
2026-06-03 05:43:39,735 - cnv_pipe.batch.run_model.cluster548 - INFO - Child process started for cluster 548 with 197 probes
2026-06-03 05:49:35,917 - cnv_pipe.batch.run_model.cluster548 - INFO - Child process finished cluster 548. Wrote cluster_548_samples.csv and cluster_548_params.csv
2026-06-03 05:49:35,920 - cnv_pipe.batch.run_model - INFO - Cluster 548 finished in 356.59 seconds. Status: SUCCESS