mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-vlhkm8ax because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:42:43,819 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:42:44,818 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:42:45,005 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:43:33,983 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:43:34,251 - cnv_pipe.batch.run_model - INFO - Processing cluster 532 with 176 probes
2026-06-03 05:43:34,718 - cnv_pipe.batch.run_model.cluster532 - INFO - Child process started for cluster 532 with 176 probes
2026-06-03 05:49:08,683 - cnv_pipe.batch.run_model.cluster532 - INFO - Child process finished cluster 532. Wrote cluster_532_samples.csv and cluster_532_params.csv
2026-06-03 05:49:08,686 - cnv_pipe.batch.run_model - INFO - Cluster 532 finished in 334.43 seconds. Status: SUCCESS