File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/6b1e5382a9149d8094c1a341b45ee0/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-rgr24xfu because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:45:44,085 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:45:45,089 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:45:45,285 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:46:37,466 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:46:37,722 - cnv_pipe.batch.run_model - INFO - Processing cluster 1161 with 185 probes
2026-06-03 05:46:38,131 - cnv_pipe.batch.run_model.cluster1161 - INFO - Child process started for cluster 1161 with 185 probes
2026-06-03 05:51:31,150 - cnv_pipe.batch.run_model.cluster1161 - INFO - Child process finished cluster 1161. Wrote cluster_1161_samples.csv and cluster_1161_params.csv
2026-06-03 05:51:31,152 - cnv_pipe.batch.run_model - INFO - Cluster 1161 finished in 293.43 seconds. Status: SUCCESS