Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/f7ce3b1f69a62c845b540532576663/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/f7ce3b1f69a62c845b540532576663/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/fac372430477ba1f6c897ba5fc7630/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/f7ce3b1f69a62c845b540532576663/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/d007c90ea19825c81861f06270a4e3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/d007c90ea19825c81861f06270a4e3/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-noq8e2yu because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:43:03,491 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:43:04,680 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:43:04,912 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:43:51,571 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:43:51,843 - cnv_pipe.batch.run_model - INFO - Processing cluster 573 with 187 probes
2026-06-03 05:43:52,299 - cnv_pipe.batch.run_model.cluster573 - INFO - Child process started for cluster 573 with 187 probes
2026-06-03 05:49:53,874 - cnv_pipe.batch.run_model.cluster573 - INFO - Child process finished cluster 573. Wrote cluster_573_samples.csv and cluster_573_params.csv
2026-06-03 05:49:53,877 - cnv_pipe.batch.run_model - INFO - Cluster 573 finished in 362.03 seconds. Status: SUCCESS