Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/f7ce3b1f69a62c845b540532576663/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/f7ce3b1f69a62c845b540532576663/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/fac372430477ba1f6c897ba5fc7630/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/f7ce3b1f69a62c845b540532576663/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/79b39f71b86e9169b5018f44a9d1fe/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/79b39f71b86e9169b5018f44a9d1fe/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-3hlmixys because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:43:39,455 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:43:40,595 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:43:40,795 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:44:34,319 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:44:34,649 - cnv_pipe.batch.run_model - INFO - Processing cluster 715 with 185 probes
2026-06-03 05:44:35,107 - cnv_pipe.batch.run_model.cluster715 - INFO - Child process started for cluster 715 with 185 probes
2026-06-03 05:49:43,710 - cnv_pipe.batch.run_model.cluster715 - INFO - Child process finished cluster 715. Wrote cluster_715_samples.csv and cluster_715_params.csv
2026-06-03 05:49:43,712 - cnv_pipe.batch.run_model - INFO - Cluster 715 finished in 309.06 seconds. Status: SUCCESS