Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/f7ce3b1f69a62c845b540532576663/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/f7ce3b1f69a62c845b540532576663/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/fac372430477ba1f6c897ba5fc7630/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/f7ce3b1f69a62c845b540532576663/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/702852d5be5344766ecaa11a2846ab/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/702852d5be5344766ecaa11a2846ab/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-ap0p3x9a because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:44:17,410 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:44:18,441 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:44:18,631 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:45:12,587 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:45:12,734 - cnv_pipe.batch.run_model - INFO - Processing cluster 783 with 134 probes
2026-06-03 05:45:13,439 - cnv_pipe.batch.run_model.cluster783 - INFO - Child process started for cluster 783 with 134 probes
2026-06-03 05:49:11,706 - cnv_pipe.batch.run_model.cluster783 - INFO - Child process finished cluster 783. Wrote cluster_783_samples.csv and cluster_783_params.csv
2026-06-03 05:49:11,708 - cnv_pipe.batch.run_model - INFO - Cluster 783 finished in 238.97 seconds. Status: SUCCESS