File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/5c7c833db26fb17cbd1c0b7b392741/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-8lchfuzi because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 05:45:09,341 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 05:45:11,074 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 05:45:11,383 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 05:46:36,366 - cnv_pipe.batch.run_model - INFO - Loaded data with 187 samples
2026-06-03 05:46:36,712 - cnv_pipe.batch.run_model - INFO - Processing cluster 981 with 172 probes
2026-06-03 05:46:37,471 - cnv_pipe.batch.run_model.cluster981 - INFO - Child process started for cluster 981 with 172 probes
2026-06-03 05:53:05,974 - cnv_pipe.batch.run_model.cluster981 - INFO - Child process finished cluster 981. Wrote cluster_981_samples.csv and cluster_981_params.csv
2026-06-03 05:53:05,977 - cnv_pipe.batch.run_model - INFO - Cluster 981 finished in 389.26 seconds. Status: SUCCESS