File Info

Filename
stderr.txt
Full Path
s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/29/2924c1f8156adbdf30258a33af614d67/stderr.txt
Size
25.3 KB
Task
call-norm_call_plot-0-cov_by_lane_1tsv-2-cyp21symbolCYP21
Attempt

Content

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+ cgp allele_specific_exp_plots normalize-coverage --coverage-file /tmp/miniwdl_task/work/_miniwdl_inputs/0/cov_by_lane_1.tsv --mapped-reads-file /tmp/miniwdl_task/work/_miniwdl_inputs/0/mapped_reads_lane_1.tsv --gene-family cyp21 --output cov_by_lane_1_normalized_cyp21.tsv --mapped-reads-threshold 10000000.000000 --target-bed /tmp/miniwdl_task/work/_miniwdl_inputs/0/cyp21_hg38.bed --tissue-stratified-normalization
2026-05-27 17:49:38,279 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:16 [INFO]: Successfully loaded `validation` tools into `cgp` tools
2026-05-27 17:49:38,298 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:25 [INFO]: Successfully loaded `tmb` tools into `cgp` tools
2026-05-27 17:49:38,947 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:34 [INFO]: Successfully loaded `snv_indel_tools` tools into `cgp` tools
2026-05-27 17:49:39,474 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:43 [INFO]: Successfully loaded `germlinesnvtools` tools into `cgp` tools
2026-05-27 17:49:39,562 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:52 [INFO]: Successfully loaded `pbconfirmatoryspecialcases` tools into `cgp` tools
2026-05-27 17:49:39,565 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:61 [INFO]: Successfully loaded `germline_cnvtools` tools into `cgp` tools
2026-05-27 17:49:39,577 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:70 [INFO]: Successfully loaded `qPCR_cnvtools` tools into `cgp` tools
2026-05-27 17:49:39,584 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:79 [INFO]: Successfully loaded `germlinespecialcases` tools into `cgp` tools
2026-05-27 17:49:39,584 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:88 [INFO]: Successfully loaded `vcf_annotation` tools into `cgp` tools
2026-05-27 17:49:39,605 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:97 [INFO]: Successfully loaded `regression_testing` tools into `cgp` tools
2026-05-27 17:49:39,701 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:106 [INFO]: Successfully loaded `reflex_rate_calc` tools into `cgp` tools
2026-05-27 17:49:39,702 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:115 [INFO]: Successfully loaded `igv_tools` tools into `cgp` tools
2026-05-27 17:49:39,751 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:124 [INFO]: Successfully loaded `qc_tools` tools into `cgp` tools
2026-05-27 17:49:39,760 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:133 [INFO]: Successfully loaded `qc_tools` tools into `cgp` tools
2026-05-27 17:49:39,761 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:142 [INFO]: Successfully loaded `sanger_qc_tools` tools into `cgp` tools
2026-05-27 17:49:39,765 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:151 [INFO]: Successfully loaded `illumina_str` tools into `cgp` tools
2026-05-27 17:49:39,765 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:160 [INFO]: Successfully loaded `utils` tools into `cgp` tools
2026-05-27 17:49:39,798 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:169 [INFO]: Successfully loaded `allele_specific_exp_plots` tools into `cgp` tools
2026-05-27 17:49:39,798 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:main:200 [INFO]: Running command: cgp-tools allele_specific_exp_plots normalize-coverage --coverage-file /tmp/miniwdl_task/work/_miniwdl_inputs/0/cov_by_lane_1.tsv --mapped-reads-file /tmp/miniwdl_task/work/_miniwdl_inputs/0/mapped_reads_lane_1.tsv --gene-family cyp21 --output cov_by_lane_1_normalized_cyp21.tsv --mapped-reads-threshold 10000000.000000 --target-bed /tmp/miniwdl_task/work/_miniwdl_inputs/0/cyp21_hg38.bed --tissue-stratified-normalization
2026-05-27 17:49:40,219 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:main:203 [INFO]: Completed successfully.
+ cgp allele_specific_exp_plots make-calls-and-vcfs --normalized-tsv cov_by_lane_1_normalized_cyp21.tsv --fasta-ref /tmp/miniwdl_task/work/_miniwdl_inputs/0/Homo_sapiens_assembly38_no_alt_contigs_v1.masked_CBSL.fasta --gene-family cyp21 --symbol CYP21A2 --target-prefix CYP21A2 --homolog-prefix CYP21A1P --target-bed /tmp/miniwdl_task/work/_miniwdl_inputs/0/cyp21_hg38.bed --exon-bed /tmp/miniwdl_task/work/_miniwdl_inputs/0/cyp21_exon_info_hg38.bed --thresholds-json '{"whole blood":{"upper":1.45,"lower":1.45},"saliva":{"upper":2.0,"lower":1.35}}' --mapped-reads /tmp/miniwdl_task/work/_miniwdl_inputs/0/mapped_reads_lane_1.tsv --mapped-reads-threshold 10000000.000000 --suppress-calls-for-source-materials saliva --tissue-stratified-normalization
2026-05-27 17:49:40,534 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:16 [INFO]: Successfully loaded `validation` tools into `cgp` tools
2026-05-27 17:49:40,551 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:25 [INFO]: Successfully loaded `tmb` tools into `cgp` tools
2026-05-27 17:49:41,190 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:34 [INFO]: Successfully loaded `snv_indel_tools` tools into `cgp` tools
2026-05-27 17:49:41,553 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:43 [INFO]: Successfully loaded `germlinesnvtools` tools into `cgp` tools
2026-05-27 17:49:41,615 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:52 [INFO]: Successfully loaded `pbconfirmatoryspecialcases` tools into `cgp` tools
2026-05-27 17:49:41,616 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:61 [INFO]: Successfully loaded `germline_cnvtools` tools into `cgp` tools
2026-05-27 17:49:41,617 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:70 [INFO]: Successfully loaded `qPCR_cnvtools` tools into `cgp` tools
2026-05-27 17:49:41,617 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:79 [INFO]: Successfully loaded `germlinespecialcases` tools into `cgp` tools
2026-05-27 17:49:41,617 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:88 [INFO]: Successfully loaded `vcf_annotation` tools into `cgp` tools
2026-05-27 17:49:41,631 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:97 [INFO]: Successfully loaded `regression_testing` tools into `cgp` tools
2026-05-27 17:49:41,720 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:106 [INFO]: Successfully loaded `reflex_rate_calc` tools into `cgp` tools
2026-05-27 17:49:41,720 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:115 [INFO]: Successfully loaded `igv_tools` tools into `cgp` tools
2026-05-27 17:49:41,756 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:124 [INFO]: Successfully loaded `qc_tools` tools into `cgp` tools
2026-05-27 17:49:41,758 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:133 [INFO]: Successfully loaded `qc_tools` tools into `cgp` tools
2026-05-27 17:49:41,758 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:142 [INFO]: Successfully loaded `sanger_qc_tools` tools into `cgp` tools
2026-05-27 17:49:41,758 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:151 [INFO]: Successfully loaded `illumina_str` tools into `cgp` tools
2026-05-27 17:49:41,758 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:160 [INFO]: Successfully loaded `utils` tools into `cgp` tools
2026-05-27 17:49:41,785 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:169 [INFO]: Successfully loaded `allele_specific_exp_plots` tools into `cgp` tools
2026-05-27 17:49:41,785 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:main:200 [INFO]: Running command: cgp-tools allele_specific_exp_plots make-calls-and-vcfs --normalized-tsv cov_by_lane_1_normalized_cyp21.tsv --fasta-ref /tmp/miniwdl_task/work/_miniwdl_inputs/0/Homo_sapiens_assembly38_no_alt_contigs_v1.masked_CBSL.fasta --gene-family cyp21 --symbol CYP21A2 --target-prefix CYP21A2 --homolog-prefix CYP21A1P --target-bed /tmp/miniwdl_task/work/_miniwdl_inputs/0/cyp21_hg38.bed --exon-bed /tmp/miniwdl_task/work/_miniwdl_inputs/0/cyp21_exon_info_hg38.bed --thresholds-json {"whole blood":{"upper":1.45,"lower":1.45},"saliva":{"upper":2.0,"lower":1.35}} --mapped-reads /tmp/miniwdl_task/work/_miniwdl_inputs/0/mapped_reads_lane_1.tsv --mapped-reads-threshold 10000000.000000 --suppress-calls-for-source-materials saliva --tissue-stratified-normalization
/pipeline/src/python/cgp/cgp/tools/allele_specific_exp_plots/make_calls_and_vcfs.py:379: SettingWithCopyWarning: 
A value is trying to be set on a copy of a slice from a DataFrame.
Try using .loc[row_indexer,col_indexer] = value instead

See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
  df.loc[:, "fileName"] = normalized_tsv
2026-05-27 17:50:01,927 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:main:203 [INFO]: Completed successfully.
+ cgp allele_specific_exp_plots create-plots-per-sample --norm-cov cov_by_lane_1_normalized_cyp21.tsv --zscores-calls cov_by_lane_1_normalized_cyp21_zscores_calls.tsv --target-prefix CYP21A2 --homolog-prefix CYP21A1P
2026-05-27 17:50:02,255 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:16 [INFO]: Successfully loaded `validation` tools into `cgp` tools
2026-05-27 17:50:02,271 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:25 [INFO]: Successfully loaded `tmb` tools into `cgp` tools
2026-05-27 17:50:02,897 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:34 [INFO]: Successfully loaded `snv_indel_tools` tools into `cgp` tools
2026-05-27 17:50:03,285 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:43 [INFO]: Successfully loaded `germlinesnvtools` tools into `cgp` tools
2026-05-27 17:50:03,347 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:52 [INFO]: Successfully loaded `pbconfirmatoryspecialcases` tools into `cgp` tools
2026-05-27 17:50:03,347 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:61 [INFO]: Successfully loaded `germline_cnvtools` tools into `cgp` tools
2026-05-27 17:50:03,349 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:70 [INFO]: Successfully loaded `qPCR_cnvtools` tools into `cgp` tools
2026-05-27 17:50:03,349 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:79 [INFO]: Successfully loaded `germlinespecialcases` tools into `cgp` tools
2026-05-27 17:50:03,349 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:88 [INFO]: Successfully loaded `vcf_annotation` tools into `cgp` tools
2026-05-27 17:50:03,363 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:97 [INFO]: Successfully loaded `regression_testing` tools into `cgp` tools
2026-05-27 17:50:03,449 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:106 [INFO]: Successfully loaded `reflex_rate_calc` tools into `cgp` tools
2026-05-27 17:50:03,450 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:115 [INFO]: Successfully loaded `igv_tools` tools into `cgp` tools
2026-05-27 17:50:03,487 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:124 [INFO]: Successfully loaded `qc_tools` tools into `cgp` tools
2026-05-27 17:50:03,488 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:133 [INFO]: Successfully loaded `qc_tools` tools into `cgp` tools
2026-05-27 17:50:03,488 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:142 [INFO]: Successfully loaded `sanger_qc_tools` tools into `cgp` tools
2026-05-27 17:50:03,489 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:151 [INFO]: Successfully loaded `illumina_str` tools into `cgp` tools
2026-05-27 17:50:03,489 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:160 [INFO]: Successfully loaded `utils` tools into `cgp` tools
2026-05-27 17:50:03,516 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:<module>:169 [INFO]: Successfully loaded `allele_specific_exp_plots` tools into `cgp` tools
2026-05-27 17:50:03,516 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:main:200 [INFO]: Running command: cgp-tools allele_specific_exp_plots create-plots-per-sample --norm-cov cov_by_lane_1_normalized_cyp21.tsv --zscores-calls cov_by_lane_1_normalized_cyp21_zscores_calls.tsv --target-prefix CYP21A2 --homolog-prefix CYP21A1P
2026-05-27 17:51:13,817 mt-3afad1d4b1cd42728e395ddfe608721a-8pstb cgp.__main__:main:203 [INFO]: Completed successfully.
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108755_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108755_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108756_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108756_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108757_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108757_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108758_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108758_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108759_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108759_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108760_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108760_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108761_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108761_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108762_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108762_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108763_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108763_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108764_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108764_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108765_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108765_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108886_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108886_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108887_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108887_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108888_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108888_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108889_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108889_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108890_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108890_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108891_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108891_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108892_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108892_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108893_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108893_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108894_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108894_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108895_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108895_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108896_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108896_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108897_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108897_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108898_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108898_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108899_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108899_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108900_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108900_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108901_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108901_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108902_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108902_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108903_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108903_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108904_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108904_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108905_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108905_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108906_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108906_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108907_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108907_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108908_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108908_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108909_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108909_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108910_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108910_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108911_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108911_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108912_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108912_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108913_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108913_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108914_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108914_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108915_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108915_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108916_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108916_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108917_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108917_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108918_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108918_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108919_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108919_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108920_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108920_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108922_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108922_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108926_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108926_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108927_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108927_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108930_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108930_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108931_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108931_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108932_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108932_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108933_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108933_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108934_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108934_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108935_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108935_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108936_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108936_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108937_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108937_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108938_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108938_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108939_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108939_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108940_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108940_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108941_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108941_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108942_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108942_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108943_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108943_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108944_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108944_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574108945_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574108945_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574154995_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574154995_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574154997_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574154997_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574155014_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574155014_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574155018_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574155018_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574155019_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574155019_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574155024_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574155024_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574155028_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574155028_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574155033_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574155033_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574155047_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574155047_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574155051_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574155051_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3574155058_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3574155058_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3579426064_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3579426064_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3579426073_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3579426073_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3579426075_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3579426075_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3579426078_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3579426078_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3579426081_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3579426081_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3579426084_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3579426084_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3579426087_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3579426087_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3579426094_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3579426094_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3579426107_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3579426107_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3579426108_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3579426108_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3579426109_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3579426109_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3579426110_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3579426110_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3579426111_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3579426111_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3579450825_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3579450825_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3579450879_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3579450879_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3579451795_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3579451795_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3579451811_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3579451811_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3579491562_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3579491562_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3599837449_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3599837449_sv1.allele_exp_CYP21A2.vcf.gz
+ for vcf in *.allele_exp_CYP21A2.vcf
+ bgzip 3599837457_sv1.allele_exp_CYP21A2.vcf
+ tabix -p vcf 3599837457_sv1.allele_exp_CYP21A2.vcf.gz