[2026-05-27 17:49:07] [miniwdl-eks.task] Staging: downloading command and 5 inputs
cp s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/command /tmp/miniwdl_task/command
cp s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/2b/2b7c0d132c92047c333171bb7ed713cb/work/mapped_reads_lane_4.tsv /tmp/miniwdl_task/work/_miniwdl_inputs/0/mapped_reads_lane_4.tsv
cp s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/2b/2b7c0d132c92047c333171bb7ed713cb/work/cov_by_lane_4.tsv /tmp/miniwdl_task/work/_miniwdl_inputs/0/cov_by_lane_4.tsv
cp s3://natera-platform-sandbox/pipeline-resources/germline_pipeline/allele_specific_expression_beds/hg38/smn_hg38.bed /tmp/miniwdl_task/work/_miniwdl_inputs/0/smn_hg38.bed
cp s3://natera-platform-sandbox/pipeline-resources/germline_pipeline/allele_specific_expression_beds/hg38/smn_exon_info_hg38_v1.bed /tmp/miniwdl_task/work/_miniwdl_inputs/0/smn_exon_info_hg38_v1.bed
cp s3://natera-platform-sandbox/pipeline-resources/germline_pipeline/ref/Homo_sapiens_assembly38_no_alt_contigs_v1.masked_CBSL/Homo_sapiens_assembly38_no_alt_contigs_v1.masked_CBSL.fasta /tmp/miniwdl_task/work/_miniwdl_inputs/0/Homo_sapiens_assembly38_no_alt_contigs_v1.masked_CBSL.fasta
[2026-05-27 17:49:16] [miniwdl-eks.task] Staging completed (5 inputs, 8521ms) s5cmd=workers:256,concurrency:10,cpus:192
+ cgp allele_specific_exp_plots normalize-coverage --coverage-file /tmp/miniwdl_task/work/_miniwdl_inputs/0/cov_by_lane_4.tsv --mapped-reads-file /tmp/miniwdl_task/work/_miniwdl_inputs/0/mapped_reads_lane_4.tsv --gene-family smn --output cov_by_lane_4_normalized_smn.tsv --mapped-reads-threshold 10000000.000000 --target-bed /tmp/miniwdl_task/work/_miniwdl_inputs/0/smn_hg38.bed --tissue-stratified-normalization
2026-05-27 17:49:17,345 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:16 [INFO]: Successfully loaded `validation` tools into `cgp` tools
2026-05-27 17:49:17,358 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:25 [INFO]: Successfully loaded `tmb` tools into `cgp` tools
2026-05-27 17:49:17,746 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:34 [INFO]: Successfully loaded `snv_indel_tools` tools into `cgp` tools
2026-05-27 17:49:18,075 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:43 [INFO]: Successfully loaded `germlinesnvtools` tools into `cgp` tools
2026-05-27 17:49:18,133 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:52 [INFO]: Successfully loaded `pbconfirmatoryspecialcases` tools into `cgp` tools
2026-05-27 17:49:18,135 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:61 [INFO]: Successfully loaded `germline_cnvtools` tools into `cgp` tools
2026-05-27 17:49:18,143 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:70 [INFO]: Successfully loaded `qPCR_cnvtools` tools into `cgp` tools
2026-05-27 17:49:18,147 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:79 [INFO]: Successfully loaded `germlinespecialcases` tools into `cgp` tools
2026-05-27 17:49:18,147 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:88 [INFO]: Successfully loaded `vcf_annotation` tools into `cgp` tools
2026-05-27 17:49:18,160 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:97 [INFO]: Successfully loaded `regression_testing` tools into `cgp` tools
2026-05-27 17:49:18,229 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:106 [INFO]: Successfully loaded `reflex_rate_calc` tools into `cgp` tools
2026-05-27 17:49:18,229 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:115 [INFO]: Successfully loaded `igv_tools` tools into `cgp` tools
2026-05-27 17:49:18,257 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:124 [INFO]: Successfully loaded `qc_tools` tools into `cgp` tools
2026-05-27 17:49:18,262 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:133 [INFO]: Successfully loaded `qc_tools` tools into `cgp` tools
2026-05-27 17:49:18,263 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:142 [INFO]: Successfully loaded `sanger_qc_tools` tools into `cgp` tools
2026-05-27 17:49:18,265 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:151 [INFO]: Successfully loaded `illumina_str` tools into `cgp` tools
2026-05-27 17:49:18,265 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:160 [INFO]: Successfully loaded `utils` tools into `cgp` tools
2026-05-27 17:49:18,288 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:169 [INFO]: Successfully loaded `allele_specific_exp_plots` tools into `cgp` tools
2026-05-27 17:49:18,288 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:main:200 [INFO]: Running command: cgp-tools allele_specific_exp_plots normalize-coverage --coverage-file /tmp/miniwdl_task/work/_miniwdl_inputs/0/cov_by_lane_4.tsv --mapped-reads-file /tmp/miniwdl_task/work/_miniwdl_inputs/0/mapped_reads_lane_4.tsv --gene-family smn --output cov_by_lane_4_normalized_smn.tsv --mapped-reads-threshold 10000000.000000 --target-bed /tmp/miniwdl_task/work/_miniwdl_inputs/0/smn_hg38.bed --tissue-stratified-normalization
2026-05-27 17:49:18,558 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:main:203 [INFO]: Completed successfully.
Found matching columns: SMN1:c.835-44G>A, SMN1:c.840C>T, SMN1:c.*3+100A>G, SMN1:c.*3+215A>G, SMN2:c.835-44G>A, SMN2:c.840C>T, SMN2:c.*3+100A>G, SMN2:c.*3+215A>G
Normalization complete. Results saved to cov_by_lane_4_normalized_smn.tsv
+ cgp allele_specific_exp_plots make-calls-and-vcfs --normalized-tsv cov_by_lane_4_normalized_smn.tsv --fasta-ref /tmp/miniwdl_task/work/_miniwdl_inputs/0/Homo_sapiens_assembly38_no_alt_contigs_v1.masked_CBSL.fasta --gene-family smn --symbol SMN1 --target-prefix SMN1 --homolog-prefix SMN2 --target-bed /tmp/miniwdl_task/work/_miniwdl_inputs/0/smn_hg38.bed --exon-bed /tmp/miniwdl_task/work/_miniwdl_inputs/0/smn_exon_info_hg38_v1.bed --thresholds-json '{"whole blood":{"upper":0.7,"lower":1.7},"saliva":{"upper":0.65,"lower":1.5}}' --mapped-reads /tmp/miniwdl_task/work/_miniwdl_inputs/0/mapped_reads_lane_4.tsv --mapped-reads-threshold 10000000.000000 --tissue-stratified-normalization
2026-05-27 17:49:18,774 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:16 [INFO]: Successfully loaded `validation` tools into `cgp` tools
2026-05-27 17:49:18,785 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:25 [INFO]: Successfully loaded `tmb` tools into `cgp` tools
2026-05-27 17:49:19,144 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:34 [INFO]: Successfully loaded `snv_indel_tools` tools into `cgp` tools
2026-05-27 17:49:19,373 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:43 [INFO]: Successfully loaded `germlinesnvtools` tools into `cgp` tools
2026-05-27 17:49:19,412 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:52 [INFO]: Successfully loaded `pbconfirmatoryspecialcases` tools into `cgp` tools
2026-05-27 17:49:19,413 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:61 [INFO]: Successfully loaded `germline_cnvtools` tools into `cgp` tools
2026-05-27 17:49:19,413 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:70 [INFO]: Successfully loaded `qPCR_cnvtools` tools into `cgp` tools
2026-05-27 17:49:19,414 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:79 [INFO]: Successfully loaded `germlinespecialcases` tools into `cgp` tools
2026-05-27 17:49:19,414 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:88 [INFO]: Successfully loaded `vcf_annotation` tools into `cgp` tools
2026-05-27 17:49:19,421 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:97 [INFO]: Successfully loaded `regression_testing` tools into `cgp` tools
2026-05-27 17:49:19,491 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:106 [INFO]: Successfully loaded `reflex_rate_calc` tools into `cgp` tools
2026-05-27 17:49:19,491 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:115 [INFO]: Successfully loaded `igv_tools` tools into `cgp` tools
2026-05-27 17:49:19,510 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:124 [INFO]: Successfully loaded `qc_tools` tools into `cgp` tools
2026-05-27 17:49:19,511 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:133 [INFO]: Successfully loaded `qc_tools` tools into `cgp` tools
2026-05-27 17:49:19,511 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:142 [INFO]: Successfully loaded `sanger_qc_tools` tools into `cgp` tools
2026-05-27 17:49:19,511 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:151 [INFO]: Successfully loaded `illumina_str` tools into `cgp` tools
2026-05-27 17:49:19,511 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:160 [INFO]: Successfully loaded `utils` tools into `cgp` tools
2026-05-27 17:49:19,529 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:169 [INFO]: Successfully loaded `allele_specific_exp_plots` tools into `cgp` tools
2026-05-27 17:49:19,529 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:main:200 [INFO]: Running command: cgp-tools allele_specific_exp_plots make-calls-and-vcfs --normalized-tsv cov_by_lane_4_normalized_smn.tsv --fasta-ref /tmp/miniwdl_task/work/_miniwdl_inputs/0/Homo_sapiens_assembly38_no_alt_contigs_v1.masked_CBSL.fasta --gene-family smn --symbol SMN1 --target-prefix SMN1 --homolog-prefix SMN2 --target-bed /tmp/miniwdl_task/work/_miniwdl_inputs/0/smn_hg38.bed --exon-bed /tmp/miniwdl_task/work/_miniwdl_inputs/0/smn_exon_info_hg38_v1.bed --thresholds-json {"whole blood":{"upper":0.7,"lower":1.7},"saliva":{"upper":0.65,"lower":1.5}} --mapped-reads /tmp/miniwdl_task/work/_miniwdl_inputs/0/mapped_reads_lane_4.tsv --mapped-reads-threshold 10000000.000000 --tissue-stratified-normalization
2026-05-27 17:49:25,524 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:main:203 [INFO]: Completed successfully.
SAMPLES PASS:  0
SAMPLES FAIL:  96
Source materials found: {'unknown': 96}
TARGETS:  ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOMOLOG TARGETS:  ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
{'SMN1:c.835-44G>A': Interval(chr5:70951896-70951897), 'SMN1:c.840C>T': Interval(chr5:70951945-70951946), 'SMN1:c.*3+100A>G': Interval(chr5:70952093-70952094), 'SMN1:c.*3+215A>G': Interval(chr5:70952208-70952209), 'SMN2:c.835-44G>A': Interval(chr5:70076476-70076477), 'SMN2:c.840C>T': Interval(chr5:70076525-70076526), 'SMN2:c.*3+100A>G': Interval(chr5:70076673-70076674), 'SMN2:c.*3+215A>G': Interval(chr5:70076788-70076789)}
INTERVAL NAME:  SMN1:c.835-44G>A
INTERVAL NAME:  SMN1:c.840C>T
INTERVAL NAME:  SMN1:c.*3+100A>G
INTERVAL NAME:  SMN1:c.*3+215A>G
Chromosome: chr5, Start: 70951896, End: 70952209
DF GENE SORTED
Empty DataFrame
Columns: [SMN2:c.840C>T, SMN2:c.835-44G>A, SMN2:c.*3+215A>G, SMN2:c.*3+100A>G]
Index: []
BEGIN VCF CREATION!
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cov_by_lane_4_normalized_smn.tsv
cov_by_lane_4_normalized_smn_zscores_calls.tsv
COMPLETE!
*.allele_exp_SMN1.vcf
VCFs made =  96
vcfs expected =  96
+ cgp allele_specific_exp_plots create-plots-per-sample --norm-cov cov_by_lane_4_normalized_smn.tsv --zscores-calls cov_by_lane_4_normalized_smn_zscores_calls.tsv --target-prefix SMN1 --homolog-prefix SMN2
2026-05-27 17:49:25,795 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:16 [INFO]: Successfully loaded `validation` tools into `cgp` tools
2026-05-27 17:49:25,806 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:25 [INFO]: Successfully loaded `tmb` tools into `cgp` tools
2026-05-27 17:49:26,172 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:34 [INFO]: Successfully loaded `snv_indel_tools` tools into `cgp` tools
2026-05-27 17:49:26,402 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:43 [INFO]: Successfully loaded `germlinesnvtools` tools into `cgp` tools
2026-05-27 17:49:26,441 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:52 [INFO]: Successfully loaded `pbconfirmatoryspecialcases` tools into `cgp` tools
2026-05-27 17:49:26,441 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:61 [INFO]: Successfully loaded `germline_cnvtools` tools into `cgp` tools
2026-05-27 17:49:26,442 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:70 [INFO]: Successfully loaded `qPCR_cnvtools` tools into `cgp` tools
2026-05-27 17:49:26,442 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:79 [INFO]: Successfully loaded `germlinespecialcases` tools into `cgp` tools
2026-05-27 17:49:26,442 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:88 [INFO]: Successfully loaded `vcf_annotation` tools into `cgp` tools
2026-05-27 17:49:26,449 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:97 [INFO]: Successfully loaded `regression_testing` tools into `cgp` tools
2026-05-27 17:49:26,516 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:106 [INFO]: Successfully loaded `reflex_rate_calc` tools into `cgp` tools
2026-05-27 17:49:26,516 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:115 [INFO]: Successfully loaded `igv_tools` tools into `cgp` tools
2026-05-27 17:49:26,534 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:124 [INFO]: Successfully loaded `qc_tools` tools into `cgp` tools
2026-05-27 17:49:26,535 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:133 [INFO]: Successfully loaded `qc_tools` tools into `cgp` tools
2026-05-27 17:49:26,535 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:142 [INFO]: Successfully loaded `sanger_qc_tools` tools into `cgp` tools
2026-05-27 17:49:26,535 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:151 [INFO]: Successfully loaded `illumina_str` tools into `cgp` tools
2026-05-27 17:49:26,535 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:160 [INFO]: Successfully loaded `utils` tools into `cgp` tools
2026-05-27 17:49:26,552 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:<module>:169 [INFO]: Successfully loaded `allele_specific_exp_plots` tools into `cgp` tools
2026-05-27 17:49:26,553 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:main:200 [INFO]: Running command: cgp-tools allele_specific_exp_plots create-plots-per-sample --norm-cov cov_by_lane_4_normalized_smn.tsv --zscores-calls cov_by_lane_4_normalized_smn_zscores_calls.tsv --target-prefix SMN1 --homolog-prefix SMN2
Found 96 samples
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3574109575_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3574109563_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3579449668_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846401_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846413_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846425_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846437_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846449_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3574109574_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3574109534_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3579449689_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846402_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846414_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846426_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846438_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846450_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3574109532_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3574109556_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3579449667_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846403_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846415_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846427_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846439_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846451_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3574109562_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3579449671_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3579449673_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846404_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846416_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846428_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846440_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846452_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3574109541_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3579449690_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3579449679_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846405_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846417_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846429_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846441_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846453_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3574109539_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3579449669_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3579449681_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846406_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846418_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846430_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846442_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846454_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3574109548_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3579449682_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3579449684_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846407_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846419_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846431_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846443_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846455_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3574109543_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599837418_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846396_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846408_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846420_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846432_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846444_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846456_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3574109542_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599837426_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846397_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846409_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846421_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846433_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846445_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846457_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3574109528_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3579491594_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846398_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846410_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846422_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846434_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846446_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846458_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3574109572_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3579449675_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: 2026-05-27 17:49:54,728 mt-fecb7acbea224f9b9663740b4799bc98-l28w4 cgp.__main__:main:203 [INFO]: Completed successfully.
['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846399_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846411_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846423_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846435_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846447_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846459_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3574109573_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3579449693_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846400_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846412_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846424_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846436_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846448_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
Index(['sample', 'SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G',
       'SMN1:c.*3+215A>G', 'SMN2:c.835-44G>A', 'SMN2:c.840C>T',
       'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G', 'source_material'],
      dtype='object')
HOMOLOGS: ['SMN1', 'SMN2']
HOM1 COLS: ['SMN1:c.835-44G>A', 'SMN1:c.840C>T', 'SMN1:c.*3+100A>G', 'SMN1:c.*3+215A>G']
HOM2 COLS: ['SMN2:c.835-44G>A', 'SMN2:c.840C>T', 'SMN2:c.*3+100A>G', 'SMN2:c.*3+215A>G']
Sample name: 3599846460_sv1
SAMPLE ZSCORES:
Empty DataFrame
Columns: [sample, SMN1:c.840C>T, SMN1:c.835-44G>A, SMN1:c.*3+215A>G, SMN1:c.*3+100A>G]
Index: []
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3574109528_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3574109528_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3574109532_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3574109532_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3574109534_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3574109534_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3574109539_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3574109539_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3574109541_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3574109541_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3574109542_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3574109542_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3574109543_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3574109543_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3574109548_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3574109548_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3574109556_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3574109556_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3574109562_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3574109562_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3574109563_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3574109563_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3574109572_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3574109572_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3574109573_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3574109573_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3574109574_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3574109574_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3574109575_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3574109575_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3579449667_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3579449667_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3579449668_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3579449668_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3579449669_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3579449669_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3579449671_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3579449671_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3579449673_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3579449673_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3579449675_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3579449675_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3579449679_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3579449679_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3579449681_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3579449681_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3579449682_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3579449682_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3579449684_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3579449684_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3579449689_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3579449689_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3579449690_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3579449690_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3579449693_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3579449693_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3579491594_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3579491594_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599837418_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599837418_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599837426_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599837426_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846396_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846396_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846397_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846397_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846398_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846398_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846399_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846399_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846400_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846400_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846401_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846401_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846402_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846402_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846403_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846403_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846404_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846404_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846405_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846405_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846406_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846406_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846407_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846407_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846408_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846408_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846409_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846409_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846410_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846410_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846411_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846411_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846412_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846412_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846413_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846413_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846414_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846414_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846415_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846415_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846416_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846416_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846417_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846417_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846418_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846418_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846419_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846419_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846420_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846420_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846421_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846421_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846422_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846422_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846423_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846423_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846424_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846424_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846425_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846425_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846426_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846426_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846427_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846427_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846428_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846428_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846429_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846429_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846430_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846430_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846431_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846431_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846432_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846432_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846433_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846433_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846434_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846434_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846435_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846435_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846436_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846436_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846437_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846437_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846438_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846438_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846439_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846439_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846440_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846440_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846441_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846441_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846442_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846442_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846443_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846443_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846444_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846444_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846445_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846445_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846446_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846446_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846447_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846447_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846448_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846448_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846449_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846449_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846450_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846450_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846451_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846451_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846452_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846452_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846453_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846453_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846454_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846454_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846455_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846455_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846456_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846456_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846457_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846457_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846458_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846458_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846459_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846459_sv1.allele_exp_SMN1.vcf.gz
+ for vcf in *.allele_exp_SMN1.vcf
+ bgzip 3599846460_sv1.allele_exp_SMN1.vcf
+ tabix -p vcf 3599846460_sv1.allele_exp_SMN1.vcf.gz
[2026-05-27 17:49:55] [miniwdl-eks.task] Task finished exit_code=0 (39231ms)
cp /tmp/miniwdl_task/stdout.txt s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/stdout.txt
cp /tmp/miniwdl_task/stderr.txt s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/stderr.txt
cp work/3574109528_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109528_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3574109528_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109528_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3579449671_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449671_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846403_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846403_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846400_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846400_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846401_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846401_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846396_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846396_sv1.allele_exp_SMN1.vcf.gz
cp work/3579449693_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449693_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599837418_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599837418_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846400_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846400_sv1.allele_exp_SMN1.vcf.gz
cp work/3599837426_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599837426_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846405_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846405_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3579449693_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449693_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846396_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846396_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846397_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846397_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599837418_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599837418_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846404_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846404_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3579449671_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449671_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846396_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846396_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3579449681_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449681_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599837426_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599837426_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3579449690_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449690_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846397_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846397_sv1.allele_exp_SMN1.vcf.gz
cp work/3599837426_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599837426_sv1.allele_exp_SMN1.vcf.gz
cp work/3574109541_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109541_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846405_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846405_sv1.allele_exp_SMN1.vcf.gz
cp work/3579449684_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449684_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3579449675_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449675_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846397_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846397_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3574109543_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109543_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3579449690_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449690_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846398_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846398_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3574109541_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109541_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3579449684_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449684_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3579449682_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449682_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3574109539_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109539_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3579449689_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449689_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3579491594_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579491594_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846406_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846406_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846399_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846399_sv1.allele_exp_SMN1.vcf.gz
cp work/3579449682_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449682_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3574109532_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109532_sv1.allele_exp_SMN1.vcf.gz
cp work/3579449667_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449667_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3579449673_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449673_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3574109573_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109573_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846398_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846398_sv1.allele_exp_SMN1.vcf.gz
cp work/3579449669_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449669_sv1.allele_exp_SMN1.vcf.gz
cp work/3574109534_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109534_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3579449668_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449668_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3574109539_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109539_sv1.allele_exp_SMN1.vcf.gz
cp work/3579449673_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449673_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3579449675_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449675_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3574109528_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109528_sv1.allele_exp_SMN1.vcf.gz
cp work/3574109542_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109542_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3579449668_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449668_sv1.allele_exp_SMN1.vcf.gz
cp work/3574109534_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109534_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3574109548_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109548_sv1.allele_exp_SMN1.vcf.gz
cp work/3574109534_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109534_sv1.allele_exp_SMN1.vcf.gz
cp work/3579449679_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449679_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3579449667_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449667_sv1.allele_exp_SMN1.vcf.gz
cp work/3574109563_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109563_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3574109575_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109575_sv1.allele_exp_SMN1.vcf.gz
cp work/3574109543_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109543_sv1.allele_exp_SMN1.vcf.gz
cp work/3574109563_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109563_sv1.allele_exp_SMN1.vcf.gz
cp work/3574109562_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109562_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3579449668_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449668_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3574109575_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109575_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3579449667_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449667_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3574109532_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109532_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3574109542_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109542_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3574109556_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109556_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3574109541_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109541_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3574109543_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109543_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3579449669_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449669_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3579449679_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449679_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3579449673_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449673_sv1.allele_exp_SMN1.vcf.gz
cp work/3579449669_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449669_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3579449671_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449671_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3574109572_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109572_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3574109562_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109562_sv1.allele_exp_SMN1.vcf.gz
cp work/3574109574_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109574_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3574109575_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109575_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3574109573_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109573_sv1.allele_exp_SMN1.vcf.gz
cp work/3574109563_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109563_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3574109562_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109562_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3574109572_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109572_sv1.allele_exp_SMN1.vcf.gz
cp work/3574109548_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109548_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3579449679_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449679_sv1.allele_exp_SMN1.vcf.gz
cp work/3579449693_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449693_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846404_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846404_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846401_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846401_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846404_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846404_sv1.allele_exp_SMN1.vcf.gz
cp work/3579449684_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449684_sv1.allele_exp_SMN1.vcf.gz
cp work/3579449681_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449681_sv1.allele_exp_SMN1.vcf.gz
cp work/3579449682_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449682_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846399_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846399_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3574109539_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109539_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3574109556_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109556_sv1.allele_exp_SMN1.vcf.gz
cp work/3579449690_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449690_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3579491594_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579491594_sv1.allele_exp_SMN1.vcf.gz
cp work/3574109572_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109572_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846398_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846398_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3579449689_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449689_sv1.allele_exp_SMN1.vcf.gz
cp work/3574109574_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109574_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3574109573_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109573_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3579449675_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449675_sv1.allele_exp_SMN1.vcf.gz
cp work/3574109574_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109574_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846403_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846403_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846401_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846401_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846399_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846399_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3579449689_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449689_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3574109556_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109556_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846402_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846402_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846402_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846402_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846400_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846400_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846402_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846402_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3579491594_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579491594_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3574109542_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109542_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846405_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846405_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846403_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846403_sv1.allele_exp_SMN1.vcf.gz
cp work/3599837418_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599837418_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3574109548_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109548_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846417_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846417_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846406_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846406_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846414_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846414_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846407_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846407_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846416_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846416_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846415_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846415_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846412_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846412_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846409_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846409_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846411_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846411_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846415_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846415_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846411_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846411_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846417_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846417_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846408_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846408_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846413_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846413_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846413_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846413_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846408_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846408_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846416_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846416_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846420_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846420_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846419_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846419_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846414_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846414_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846420_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846420_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846421_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846421_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846419_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846419_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846409_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846409_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846407_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846407_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846421_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846421_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846408_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846408_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846416_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846416_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846410_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846410_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846421_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846421_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846418_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846418_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846417_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846417_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846411_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846411_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846407_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846407_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846418_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846418_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846422_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846422_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846422_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846422_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846422_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846422_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846420_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846420_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846415_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846415_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846424_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846424_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846423_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846423_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846423_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846423_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846428_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846428_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846428_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846428_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846426_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846426_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846424_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846424_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846429_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846429_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846429_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846429_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846430_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846430_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846429_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846429_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846432_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846432_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846434_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846434_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846412_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846412_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846430_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846430_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846434_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846434_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846437_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846437_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846414_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846414_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846430_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846430_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846435_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846435_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846433_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846433_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846418_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846418_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846437_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846437_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846435_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846435_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846435_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846435_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846437_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846437_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846427_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846427_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846431_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846431_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846410_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846410_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846440_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846440_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846442_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846442_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3579449681_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3579449681_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846439_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846439_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846441_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846441_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846436_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846436_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846441_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846441_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846438_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846438_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846442_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846442_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846442_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846442_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846438_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846438_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846440_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846440_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846443_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846443_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846406_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846406_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846431_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846431_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846443_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846443_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846443_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846443_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846438_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846438_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846413_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846413_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846409_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846409_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846439_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846439_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846419_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846419_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846436_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846436_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846432_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846432_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846444_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846444_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846423_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846423_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846447_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846447_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846447_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846447_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846446_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846446_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846425_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846425_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846448_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846448_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846433_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846433_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846450_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846450_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846446_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846446_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846441_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846441_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846445_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846445_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846446_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846446_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846449_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846449_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846447_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846447_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846425_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846425_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846425_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846425_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846427_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846427_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846424_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846424_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846427_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846427_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846451_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846451_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846450_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846450_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846451_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846451_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846436_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846436_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846453_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846453_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846410_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846410_sv1.allele_exp_SMN1.vcf.gz
cp work/3574109532_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3574109532_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846426_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846426_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846454_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846454_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846453_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846453_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846451_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846451_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846456_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846456_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846445_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846445_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846454_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846454_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846455_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846455_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/cov_by_lane_4_normalized_smn_column_medians.csv s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/cov_by_lane_4_normalized_smn_column_medians.csv
cp work/3599846456_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846456_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846458_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846458_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846458_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846458_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846457_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846457_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846456_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846456_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846455_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846455_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846457_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846457_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846455_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846455_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846412_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846412_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846460_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846460_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846459_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846459_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846428_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846428_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846426_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846426_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846457_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846457_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/cov_by_lane_4_normalized_smn_zscores_calls.tsv s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/cov_by_lane_4_normalized_smn_zscores_calls.tsv
cp work/3599846448_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846448_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846460_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846460_sv1.allele_exp_SMN1.vcf.gz
cp work/_miniwdl_inputs/0/smn_hg38.bed s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/_miniwdl_inputs/0/smn_hg38.bed
cp work/3599846458_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846458_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846459_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846459_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846432_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846432_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846431_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846431_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846460_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846460_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/_miniwdl_inputs/0/smn_exon_info_hg38_v1.bed s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/_miniwdl_inputs/0/smn_exon_info_hg38_v1.bed
cp work/cov_by_lane_4_normalized_smn.tsv s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/cov_by_lane_4_normalized_smn.tsv
cp work/3599846459_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846459_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/_miniwdl_inputs/0/mapped_reads_lane_4.tsv s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/_miniwdl_inputs/0/mapped_reads_lane_4.tsv
cp work/3599846452_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846452_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/cov_by_lane_4_normalized_smn_reads_normalized.csv s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/cov_by_lane_4_normalized_smn_reads_normalized.csv
cp work/3599846449_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846449_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846434_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846434_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846449_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846449_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846439_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846439_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846453_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846453_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846448_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846448_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/_miniwdl_inputs/0/cov_by_lane_4.tsv s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/_miniwdl_inputs/0/cov_by_lane_4.tsv
cp work/3599846433_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846433_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846444_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846444_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846452_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846452_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846445_sv1.allele_exp_SMN1.vcf.gz s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846445_sv1.allele_exp_SMN1.vcf.gz
cp work/3599846444_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846444_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846452_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846452_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846450_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846450_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/3599846440_sv1.SMN1_SMN2_allele_exp_plot.pdf s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846440_sv1.SMN1_SMN2_allele_exp_plot.pdf
cp work/3599846454_sv1.allele_exp_SMN1.vcf.gz.tbi s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/3599846454_sv1.allele_exp_SMN1.vcf.gz.tbi
cp work/_miniwdl_inputs/0/Homo_sapiens_assembly38_no_alt_contigs_v1.masked_CBSL.fasta s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/work/_miniwdl_inputs/0/Homo_sapiens_assembly38_no_alt_contigs_v1.masked_CBSL.fasta
cp /tmp/miniwdl_task/timing.json s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/timing.json
cp /tmp/miniwdl_task/metrics.json s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/metrics.json
cp /tmp/miniwdl_task/exit_code s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d07c06b2ffba15aa2321a4230c0019e/exit_code
[2026-05-27 17:50:04] [miniwdl-eks.task] Done exit_code=0 (8643ms unstage, 56397ms total)