wrapper.sh - Workdir - call-concat_by_lane_standalone

File Info

Filename: wrapper.sh
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/2b/2b7c0d132c92047c333171bb7ed713cb/wrapper.sh
Size: 341.8 KB
Task: call-concat_by_lane_standalone
Attempt
Content

#!/bin/bash
set -euo pipefail

# Detect pod CPU. cgroup v2 (cpu.max) then v1 fallback; "max" or "-1" means
# no limit set, fall back to nproc.
if read -r _q _p < /sys/fs/cgroup/cpu.max 2>/dev/null && [ "$_q" != "max" ]; then
    POD_CPUS=$((_q / _p))
elif _q=$(cat /sys/fs/cgroup/cpu/cpu.cfs_quota_us 2>/dev/null) && [ -n "$_q" ] && [ "$_q" -gt 0 ]; then
    POD_CPUS=$((_q / $(cat /sys/fs/cgroup/cpu/cpu.cfs_period_us)))
else
    POD_CPUS=$(nproc)
fi
[ "$POD_CPUS" -lt 1 ] && POD_CPUS=1

# S3 transfer parallelism: numworkers = parallel files in flight,
# concurrency = parallel multipart parts per file. Cap small pods at -c 5
# to stay gentle on S3 prefix request rate when many pods stage at once.
_s5_numworkers=256
[ "$POD_CPUS" -le 4 ] && _s5_concurrency=5 || _s5_concurrency=10

S5CMD="/opt/s5cmd/bin/s5cmd --log info --numworkers $_s5_numworkers"
S5_CP_FLAGS="-c $_s5_concurrency"
S3_TASK_DIR="s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/2b/2b7c0d132c92047c333171bb7ed713cb"
TASK_DIR="/tmp/miniwdl_task"
EXIT_CODE=1  # Default to failure
UNSTAGE_RET=0
pid=""
STAGE_MS=0
TASK_MS=0
TRACE_START=0
METRICS_ENABLED=0

_ms() { date +%s%3N; }
log() { echo "[$(date '+%Y-%m-%d %H:%M:%S')] [miniwdl-eks.task] $1" >&2; }


miniwdl_date() { local p=${1:-%s%3N}; date +"$p" 2>/dev/null || date +"$p"; }

miniwdl_tree() {
    local pid=$1
    declare -a ALL_CHILDREN
    while read P PP; do
        ALL_CHILDREN[$PP]+=" $P"
    done < <(ps -e -o pid= -o ppid=)

    pstat() {
        local STATUS=$(2>/dev/null < /proc/$1/status grep -E 'Vm|ctxt')
        if [ $? = 0 ]; then
            local x_vsz=$(echo "$STATUS" | grep VmSize | awk '{print $2}' || echo -n '0')
            local x_rss=$(echo "$STATUS" | grep VmRSS | awk '{print $2}' || echo -n '0')
            local x_peak=$(echo "$STATUS" | grep -E 'VmPeak|VmHWM' | sed 's/^.*:\s*//' | sed 's/[\sa-zA-Z]*$//' | tr '\n' ' ' || echo -n '0 0')
            local x_pmem=$(awk -v rss=$x_rss -v mem_tot=$mem_tot 'BEGIN {printf "%.0f", rss/mem_tot*100*10}' || echo -n '0')
            local vol_ctxt=$(echo "$STATUS" | grep '\bvoluntary_ctxt_switches' | awk '{print $2}' || echo -n '0')
            local inv_ctxt=$(echo "$STATUS" | grep '\bnonvoluntary_ctxt_switches' | awk '{print $2}' || echo -n '0')
            cpu_stat[$1]="$1 $x_pmem $x_vsz $x_rss $x_peak $vol_ctxt $inv_ctxt"
        fi
    }

    pwalk() {
        pstat $1
        for i in ${ALL_CHILDREN[$1]:=}; do pwalk $i; done
    }
    pwalk $1
}

miniwdl_pstat() {
    cpu_stat=()
    miniwdl_tree $1
    declare -a sum=(0 0 0 0 0 0 0 0)
    local pid; local i
    for pid in "${!cpu_stat[@]}"; do
        local row=(${cpu_stat[pid]})
        for i in "${!row[@]}"; do
            [ $i != 0 ] && sum[i]=$((sum[i]+row[i]))
        done
    done
    for i in {1..7}; do
        if [ ${sum[i]} -lt ${cpu_peak[i]} ]; then
            sum[i]=${cpu_peak[i]}
        else
            cpu_peak[i]=${sum[i]}
        fi
    done
    miniwdl_pstat_ret=(${sum[*]})
}

# Background memory/context-switch poller. Adaptive interval: 1s -> 5s -> 30s.
# Writes peak values to a temp file when signaled to stop.
# RSS uses cgroup memory stats (no CoW double-counting across forks).
# Context switches and vmem still use per-process /proc tree walk.
miniwdl_mem_watch() {
    local pid=$1
    local mem_file=$2
    local count=0
    declare -a cpu_stat=(0 0 0 0 0 0 0 0)
    declare -a cpu_peak=(0 0 0 0 0 0 0 0)
    local mem_tot=$(< /proc/meminfo grep MemTotal | awk '{print $2}')
    local timeout; local DONE; local STOP=''
    local cg_peak_kb=0
    local cg_last_kb=0

    while true; do
        miniwdl_pstat $pid
        # Read cgroup RSS (anon memory, bytes) — no CoW double-counting
        local cg_kb=$(( $(awk '/^anon / {print $2; exit}' /sys/fs/cgroup/memory.stat 2>/dev/null || echo 0) / 1024 ))
        cg_last_kb=$cg_kb
        [ $cg_kb -gt $cg_peak_kb ] && cg_peak_kb=$cg_kb
        if [ $count -lt 10 ]; then timeout=1
        elif [ $count -lt 120 ]; then timeout=5
        else timeout=30
        fi
        read -t $timeout -r DONE || true
        [[ $DONE ]] && break
        if [ ! -e /proc/$pid ]; then
            [ ! $STOP ] && STOP=$(miniwdl_date)
            [ $(($(miniwdl_date)-STOP)) -gt 10000 ] && break
        fi
        count=$((count+1))
    done

    # Write peak values to temp file (KB units)
    # rss: last-sampled cgroup anon memory; peak_rss: highest observed across all polls
    # %mem: peak-based (matches peak_rss, not rss)
    # vmem and peak_vmem use per-process tree walk (no cgroup equivalent)
    # Struct: %mem vmem rss peak_vmem peak_rss vol_ctxt inv_ctxt
    local cg_pmem=$(awk -v rss=$cg_peak_kb -v mem_tot=$mem_tot 'BEGIN {printf "%.0f", rss/mem_tot*100*10}' || echo 0)
    echo "$cg_pmem ${miniwdl_pstat_ret[2]} $cg_last_kb ${miniwdl_pstat_ret[4]} $cg_peak_kb ${miniwdl_pstat_ret[6]} ${miniwdl_pstat_ret[7]}" > "$mem_file"
}

miniwdl_fd() {
    local FD=11
    while [ -e /proc/$$/fd/$FD ]; do FD=$((FD+1)); done
    echo $FD
}

# Snapshot /proc before task, launch mem_watch background poller.
miniwdl_trace_start() {
    local pid=$$
    if ! command -v ps &>/dev/null; then
        log "Warning: 'ps' not found, skipping metrics collection"
        METRICS_ENABLED=0
        return
    fi
    METRICS_ENABLED=1
    MEM_FILE="$TASK_DIR/.mem_stats"
    NUM_CPUS=$(< /proc/cpuinfo grep '^processor' -c)
    CPU_MODEL=$(< /proc/cpuinfo grep '^model name' | head -n 1 | awk 'BEGIN{FS="\t: "} { print $2 }')
    TOT_TIME0=$(grep '^cpu ' /proc/stat | awk '{sum=$2+$3+$4+$5+$6+$7+$8+$9; printf "%.0f",sum}')
    CPU_TIME0=$(2>/dev/null < /proc/$pid/stat awk '{printf "%.0f", $16+$17 }' || echo -n 'X')
    IO_STAT0=($(2>/dev/null < /proc/$pid/io sed 's/^.*:\s*//' | head -n 6 | tr '\n' ' ' || echo -n '0 0 0 0 0 0'))
    TRACE_START=$(miniwdl_date)
}

# Snapshot /proc after task, signal mem_watch, compute deltas, write metrics.json.
miniwdl_trace_end() {
    [ "${METRICS_ENABLED:-0}" = "0" ] && return
    [ "${TRACE_START:-0}" = "0" ] && return  # trace_start never ran
    local pid=$$
    local end_millis=$(miniwdl_date)
    local tot_time1=$(grep '^cpu ' /proc/stat | awk '{sum=$2+$3+$4+$5+$6+$7+$8+$9; printf "%.0f",sum}')
    local cpu_time1=$(2>/dev/null < /proc/$pid/stat awk '{printf "%.0f", $16+$17 }' || echo -n 'X')
    local cpu_pct=$(awk -v p1=$cpu_time1 -v p0=$CPU_TIME0 -v t1=$tot_time1 -v t0=$TOT_TIME0 -v n=$NUM_CPUS \
        'BEGIN { pct=(p1-p0)/(t1-t0)*100*n; printf("%.1f", pct>0 ? pct : 0) }')

    local io_stat1=($(2>/dev/null < /proc/$pid/io sed 's/^.*:\s*//' | head -n 6 | tr '\n' ' ' || echo -n '0 0 0 0 0 0'))
    local i
    for i in {0..5}; do io_stat1[i]=$((io_stat1[i]-${IO_STAT0[i]:-0})); done

    local wall_time=$((end_millis-TRACE_START))

    # Signal mem_watch to stop and wait for it
    if [ "${mem_proc:-}" ]; then
        [ -e /proc/$mem_proc ] && eval "echo 'DONE' >&$mem_fd" || true
        wait $mem_proc 2>/dev/null || true
        while [ -e /proc/$mem_proc ]; do sleep 0.1; done
    fi

    # Read mem_watch results (KB units) and convert to bytes
    local mem_pct=0 vmem=0 rss=0 peak_vmem=0 peak_rss=0 vol_ctxt=0 inv_ctxt=0
    if [ -f "$MEM_FILE" ]; then
        read mem_pct vmem rss peak_vmem peak_rss vol_ctxt inv_ctxt < "$MEM_FILE"
        # Convert KB to bytes
        vmem=$((vmem * 1024))
        rss=$((rss * 1024))
        peak_vmem=$((peak_vmem * 1024))
        peak_rss=$((peak_rss * 1024))
    fi

    cat > "$TASK_DIR/metrics.json" << METRICS_EOF
{"realtime":$wall_time,"cpuPercent":$cpu_pct,"cpuModel":"$CPU_MODEL","memPercent":$mem_pct,"vmem":$vmem,"rss":$rss,"peakVmem":$peak_vmem,"peakRss":$peak_rss,"rchar":${io_stat1[0]},"wchar":${io_stat1[1]},"readBytes":${io_stat1[4]},"writeBytes":${io_stat1[5]},"volCtxt":$vol_ctxt,"invCtxt":$inv_ctxt}
METRICS_EOF
    log "Metrics: cpu=${cpu_pct}% rss=$((rss/1048576))MB peak_rss=$((peak_rss/1048576))MB wall=${wall_time}ms"
}


# Recursively kill a process and all its descendants.
miniwdl_kill() {
    declare -a children
    while read P PP; do
        children[$PP]+=" $P"
    done < <(ps -e -o pid= -o ppid=)
    _kill() {
        [[ $1 != $$ ]] && kill $1 2>/dev/null || true
        for i in ${children[$1]:=}; do _kill $i; done
    }
    _kill $1
}

# On SIGTERM/SIGINT (K8s pod termination, scale-down), kill the task process tree.
# The EXIT trap (cleanup) still fires after this to upload logs and work directory.
miniwdl_on_term() {
    set +e
    [[ "$pid" ]] && miniwdl_kill $pid
}

# Trap to ensure we upload logs and work directory on ANY exit (success or failure)
cleanup() {
    set +eu
    local exit_code=$EXIT_CODE

    # Collect metrics (best-effort, before unstage so we capture task-only values)
    miniwdl_trace_end 2>/dev/null || true

    $S5CMD cp "$TASK_DIR/stdout.txt" "$S3_TASK_DIR/stdout.txt" || true
    $S5CMD cp "$TASK_DIR/stderr.txt" "$S3_TASK_DIR/stderr.txt" || true

    cd "$TASK_DIR"
    for _unstage_attempt in 1 2 3; do
        $S5CMD sync $S5_CP_FLAGS --exclude "_miniwdl_inputs/*" work/ "$S3_TASK_DIR/work/"
        UNSTAGE_RET=$?
        [[ $UNSTAGE_RET -eq 0 ]] && break
        [[ $_unstage_attempt -lt 3 ]] && {
            log "Unstage attempt $_unstage_attempt/3 failed (ret=$UNSTAGE_RET), retrying in ~30s..."
            sleep $((30 + RANDOM % 10))
        }
    done

    # Record empty directories so the runner can preserve them as S3 directory
    # markers. s5cmd sync only uploads objects — empty dirs vanish without this.
    # Runs after sync intentionally: (1) empty_dirs.txt is not part of the synced
    # work artifacts, and (2) we capture the true post-upload filesystem state.
    find work/ -type d -empty ! -path "work/_miniwdl_inputs*"         > "$TASK_DIR/empty_dirs.txt" 2>/dev/null || true
    if [ -s "$TASK_DIR/empty_dirs.txt" ]; then
        $S5CMD cp "$TASK_DIR/empty_dirs.txt" "$S3_TASK_DIR/empty_dirs.txt" || true
    fi

    UNSTAGE_MS=$(( $(_ms) - _START_MS - STAGE_MS - TASK_MS ))
    TOTAL_MS=$(( $(_ms) - _START_MS ))
    cat > "$TASK_DIR/timing.json" << TIMING
{"stage_ms":$STAGE_MS,"task_ms":$TASK_MS,"unstage_ms":$UNSTAGE_MS,"total_ms":$TOTAL_MS,"exit_code":$exit_code,"unstage_ret":$UNSTAGE_RET}
TIMING
    $S5CMD cp "$TASK_DIR/timing.json" "$S3_TASK_DIR/timing.json" || true
    [ -f "$TASK_DIR/metrics.json" ] && $S5CMD cp "$TASK_DIR/metrics.json" "$S3_TASK_DIR/metrics.json" || true

    # Task failure takes priority; if task succeeded but unstage failed, use unstage code
    local final_code=$exit_code
    [[ $final_code -eq 0 && $UNSTAGE_RET -ne 0 ]] && final_code=$UNSTAGE_RET
    echo $final_code > "$TASK_DIR/exit_code"
    $S5CMD cp "$TASK_DIR/exit_code" "$S3_TASK_DIR/exit_code" || true
    log "Done exit_code=$exit_code (${UNSTAGE_MS}ms unstage, ${TOTAL_MS}ms total)"
}
trap cleanup EXIT
trap miniwdl_on_term TERM INT USR2

_START_MS=$(_ms)
log "Staging: downloading command and 1539 inputs"
$S5CMD cp "$S3_TASK_DIR/command" "$TASK_DIR/command"

mkdir -p "/tmp/miniwdl_task/work/_miniwdl_inputs/0"
mkdir -p "$TASK_DIR/work"

# Stage inputs with outer retry on S3 throttling (503 SlowDown on same-prefix
# reads). Fails the pod after 3 attempts — WDL task-level maxRetries provides
# the final backstop.
_do_stage() {
    $S5CMD run << STAGE_FILES
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108897_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108897_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843948_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843948_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f1/f1d2376d56d91c1e1900a0582fb05e4f/work/3579426054_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426054_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/44/446136d9f6ad2a6b75b67ad3f124079f/work/3574108771_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108771_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846498_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846498_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846497_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846497_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108805_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108805_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/1f/1f5633a50de85d27794349c4c63d122a/work/3574154990_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574154990_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4c/4ccb65db9b62992c5ac787dbb72c4513/work/3599846397_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846397_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109545_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109545_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/38/382e3ccea4e9c03ab9a65611408f03e1/work/3599843900_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843900_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/0c/0c8e4a3956ce47c086cdd4d8ec6094be/work/3579467475_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467475_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426060_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426060_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d7/d7669fc329b11f2c5f853dab32ea0bca/work/3574155028_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155028_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c1/c122bcce0be71e98cf40d4e247d2dd0d/work/3599846458_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846458_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/08/0880acf3c6425bdd2b69362d6f9b13f5/work/3574109538_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109538_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/98/98d10a8f4c0b50fdbd3a686bad5c5ee7/work/3574108827_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108827_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/83/833206d546e13db5a5bb7d3804d0fdd1/work/3579426072_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426072_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/02/021f819b4239f69e5a19518305968b1c/work/3579426052_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426052_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843901_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843901_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579450878_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579450878_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/fe/fea0ad1919178a0a46fd1a0c57f69338/work/3599846436_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846436_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843952_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843952_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846489_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846489_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108776_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108776_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b0/b04b1707e382b05b839b405a6d01875e/work/3574108792_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108792_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/0b/0ba7e1b0e655d6b01d7436ecd9c89b3a/work/3579467501_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467501_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846485_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846485_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451795_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451795_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c2/c214d58a7c983638a750f5851a545ae0/work/3579426098_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426098_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108905_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108905_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/af/afcdcf65685b56e013a2dc45defd8e2b/work/3574108849_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108849_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843907_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843907_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426125_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426125_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109550_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109550_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/19/1959d99eda6ca02e944fd6c8a1715a6c/work/3579467485_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467485_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f1/f16f9e23fe29fb22e560d05f77d1df53/work/3579426107_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426107_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ba/baabe287bc2ec966c042f867f3a319f6/work/3599846413_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846413_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426090_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426090_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155017_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155017_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846448_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846448_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843968_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843968_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/eb/eb9fa5319910d7f73aa734b0fff9a387/work/3574109537_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109537_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155014_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155014_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a0/a098399cf54da203bd885db446aa18c2/work/3599846508_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846508_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846435_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846435_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846507_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846507_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846447_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846447_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/89/89eceb2d895f79b7994ad2c9ef756cd3/work/3579426119_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426119_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/95/9546240275ee42890de5c1d6ba1186fa/work/3599846444_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846444_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846397_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846397_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/0f/0f15340df62faaf9e6e8db94b148b5fe/work/3574108758_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108758_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843927_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843927_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426078_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426078_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/28/282e9a35e87a67e8a713e059e24fd656/work/3599846530_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846530_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846461_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846461_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a4/a430f25759d5afa8be81d01d39814316/work/3599846520_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846520_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/1f/1fb4b9216a9dff6a90e69bb53feac44c/work/3599846391_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846391_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846457_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846457_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108885_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108885_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846529_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846529_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846454_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846454_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155032_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155032_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843975_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843975_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846380_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846380_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/76/7637e5453b8456c9cf8a431dd163fd25/work/3599843914_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843914_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/87/87e856bb9947c9cbc817811b67f3753c/work/3574108882_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108882_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/cc/cc963a3d3b170b7996a6a8af5a2c8b3e/work/3574108808_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108808_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843909_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843909_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/59/59f4f946decf6df6340dca9e17b8f688/work/3599843928_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843928_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843965_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843965_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/18/18b3e9c078ea4df0bac03daff4190d9a/work/3574108852_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108852_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/30/30fa6fe01250a0c3e7e350c6b9e15a37/work/3574108764_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108764_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/48/48b3bb0611081f79bdaf4e82abfda731/work/3574108910_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108910_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155033_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155033_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108797_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108797_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/fb/fb7e1d1930276ad18446260413da96e7/work/3574108869_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108869_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843946_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843946_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/eb/eb4ebbfb7255bc244a579f43fe76523a/work/3599846403_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846403_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a9/a9d450ff625d98c895d2bb25c5a3f34a/work/3579467498_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467498_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426063_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426063_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846470_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846470_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846416_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846416_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/01/011b0660bc49ba75ee793b41ce3d9e22/work/3599846496_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846496_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108806_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108806_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451799_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451799_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/78/78254b782944e71a6c3f0cb1a913ba86/work/3599846402_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846402_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e2/e20a0b001278f781abc0ee0818c6d102/work/3599837370_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837370_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/41/411417c704d72715639e53fd5a16fe87/work/3599843916_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843916_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/8c/8c231685262d56ce80656f12d8dbf0b7/work/3574154983_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574154983_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/13/130eceab85281a772d6e4283ad334c1f/work/3599837442_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837442_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/54/5496c6fdd3362dbb5e6934f54a0e6a50/work/3599843934_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843934_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108822_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108822_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451804_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451804_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108812_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108812_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843949_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843949_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/48/48af9c66d2c26dc50c96edfa1a36ef49/work/3579426106_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426106_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108916_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108916_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d8/d84ed2d7399b365ff909bde93ce329c1/work/3579467517_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467517_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/96/964123b3c48f12e88a7250d9a3f1f8b0/work/3574154984_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574154984_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108840_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108840_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/80/805a6e9eb8e769ef3f0206f396ec889b/work/3579451802_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451802_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846387_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846387_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/3f/3fce36682d4235febb2e8b08a58140f7/work/3574108807_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108807_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837410_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837410_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/eb/eb8b60941099deece9f9b5517314d622/work/3574155022_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155022_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108856_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108856_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b6/b6c1a9d6ef09a3b199fb9dbb5c065472/work/3574109533_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109533_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/7b/7ba1b3222e7567965f6070e33213cfca/work/3599843983_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843983_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843895_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843895_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467453_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467453_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846491_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846491_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/8a/8ac632fe8d73ae95ec72750c11bfbf9f/work/3599843959_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843959_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467504_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467504_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426114_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426114_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846503_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846503_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109529_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109529_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/3b/3ba5416edeeed8dddbf54be1eec118ff/work/3574108889_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108889_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846531_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846531_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426072_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426072_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c6/c61e37ca51cb2e64b7e201f7949e631d/work/3579449678_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449678_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/95/95268d73b1d68b22e6dbab81ea9999c4/work/3599846513_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846513_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846474_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846474_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449678_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449678_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846430_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846430_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155053_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155053_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108854_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108854_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843940_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843940_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ee/ee59b4ba9858a1591125772b31d3890f/work/3599846503_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846503_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d5/d5b380527453c60dc5121db0f9c801a0/work/3579467434_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467434_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846405_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846405_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426109_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426109_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579490671_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579490671_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/97/977f4710a06fd9565a060d0e6a4f505a/work/3599846446_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846446_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/6a/6a934e5e12d5490a366a282c7be0f932/work/3574108919_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108919_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ec/ec0af0a1b942838d5142ac9aed204b50/work/3599846470_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846470_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426115_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426115_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426120_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426120_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467466_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467466_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109532_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109532_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/2d/2df7f2a782f234832ef9bf8b3287dc44/work/3579426059_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426059_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ef/ef5e2ea66dca5e8245ad33c745264502/work/3574108935_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108935_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/3b/3b03c6ab4a5ecb104953ebcb24dc1040/work/3579467494_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467494_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837386_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837386_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/24/249aeb20b0de31061b6d81b7a82084bb/work/3599846484_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846484_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846524_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846524_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/8b/8b30560d6cd4d33af334b2dfe1e4f486/work/3579467510_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467510_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/72/724ddf796104fc09e42082f80a6f0acf/work/3599843955_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843955_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846520_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846520_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/95/95ce7b9203f5b5e207efe3e5c3c6c35f/work/3599846399_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846399_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/1e/1e91136b55d351db381ee0af6ac21534/work/3574109540_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109540_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846523_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846523_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108848_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108848_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/87/878e8d683c2c5cbe35e4715b561c2297/work/3579467442_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467442_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/2a/2a48168b51871dcd0b364fe37c334d78/work/3579491570_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579491570_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843894_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843894_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e9/e9f21df8404f123e377b43ba39ef4b8f/work/3599843935_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843935_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e2/e2995e6dda433be1222368728c3cd518/work/3599843962_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843962_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843983_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843983_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837457_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837457_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/7d/7dd43c29f0e933d55f8aa11d3d132ecc/work/3579467448_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467448_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426074_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426074_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155015_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155015_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b8/b82eb633c0f6ff0d666969a677a53b84/work/3574108825_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108825_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b4/b4708d9b37f8d6488c0adfc30e09c6cc/work/3574108795_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108795_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108866_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108866_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108843_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108843_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108896_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108896_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/8f/8fb9844c1baf8bd81f1251749044a728/work/3579426053_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426053_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843903_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843903_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d7/d7ab42abead35fbd5ba63a1887b7bab6/work/3599843942_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843942_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426064_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426064_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449669_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449669_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579450862_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579450862_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155046_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155046_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/33/337a21d91d68d7a1da549582dc44f2a7/work/3579467449_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467449_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846432_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846432_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426112_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426112_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/fa/fa745f45f4d08bebe61bda2212fec777/work/3574155023_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155023_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/55/55c78e0371632a5db2f1205315723d93/work/3574108773_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108773_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e5/e5e39544e91b0458069e961bd41f0acc/work/3599846450_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846450_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155038_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155038_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108941_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108941_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426083_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426083_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/2d/2d62a4ddc3910548e0e2f8e9bcbd3d45/work/3579467462_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467462_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449693_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449693_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108791_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108791_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846501_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846501_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155021_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155021_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/2e/2ede50402babf54a3db0dfd359d846c7/work/3579426090_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426090_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/6b/6b06e0d062645e417ef1465af4945eeb/work/3599846529_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846529_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/06/063353b611fd805580d9abc126199b33/work/3579467477_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467477_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451797_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451797_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109562_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109562_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843930_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843930_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f1/f16d6c7fdfd08e43bdea375746934012/work/3574108939_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108939_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/5a/5a809d94d35412a764dba629217552f3/work/3599843956_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843956_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ce/ce28fbb2691f003d278af28942ddafbc/work/3579426067_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426067_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467493_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467493_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108933_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108933_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843953_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843953_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109568_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109568_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467514_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467514_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/48/48fa64dca16e75693ab03b49c981dea1/work/3574155049_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155049_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ce/ce6275431b62618310bb56700c01bddb/work/3574108868_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108868_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f8/f8ef74174d543261c53e41ef0c721ef6/work/3574109546_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109546_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c1/c1bfe9603c56db2352008753b9478365/work/3599846418_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846418_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108909_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108909_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155060_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155060_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/50/50abe7372c93489937354796925b58e1/work/3579451800_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451800_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843934_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843934_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/86/86fd6a248b273eced474eea00bc479f9/work/3599846505_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846505_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846510_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846510_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d2/d2eb2256e2fcf1d35aa2458d4278db0c/work/3579451794_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451794_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467454_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467454_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f8/f82caa0912a2e097d8ca55b92144fca2/work/3599843917_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843917_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108787_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108787_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155047_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155047_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846478_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846478_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155058_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155058_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/63/633d62f66db1154ed709b138f9513a3c/work/3574109575_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109575_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/79/7976fbf452251a300b89c9489c22fb81/work/3599843932_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843932_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/0f/0f271c1f140c1d80667e72186588831f/work/3579426088_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426088_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/0f/0f731bc7bdd841d35eef4bb24b814317/work/3574108809_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108809_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f0/f06556d337f7d4e135acde8a61ad65ab/work/3579467457_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467457_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579491586_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579491586_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108862_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108862_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451805_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451805_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108815_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108815_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846522_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846522_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108913_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108913_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/0e/0e97ff31becfa3cd74051aea49f7b6fc/work/3599843977_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843977_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/81/818186c7f46fd3103c314fe9273b703e/work/3579467518_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467518_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837417_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837417_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f4/f4232c0ddb75f78a8642293b126c17d9/work/3574108791_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108791_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843888_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843888_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c9/c9299f04e4421c74bf73a59b90c4e386/work/3579467444_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467444_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f2/f293067ac0555d6fd7b69ba21b1ce23c/work/3579426125_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426125_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574154988_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574154988_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843924_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843924_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/08/08ed565922f44ae9eb56ba9ca256ad66/work/3599846414_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846414_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ca/ca5b9ea503f5c72b2f9c621ad1af7530/work/3579490323_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579490323_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e3/e31964449e8b121abd8c4dac436972be/work/3574108893_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108893_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b8/b8d0fac04f984c7816e1dbcbdce955f3/work/3579467505_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467505_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843902_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843902_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/05/05fcbb2d13914298a207cf385a5d9cd8/work/3599846472_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846472_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846445_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846445_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426094_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426094_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467432_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467432_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155030_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155030_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467505_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467505_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/3d/3d6e216016031be5dee803765202a1e6/work/3599846467_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846467_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155020_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155020_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846399_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846399_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d9/d988768db6928dd869c6f0aaef931680/work/3574108779_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108779_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155031_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155031_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/69/69f6aa651f111e44a002096c7054acf0/work/3579467458_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467458_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846459_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846459_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/34/349bd46bfc849670af892e95a56c55ba/work/3574108828_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108828_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ef/efb1a11f6fcca39b8b3b177cab77d486/work/3574108770_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108770_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/1d/1db1d8cb7dd2d5c3940d8389c8c3dc27/work/3579467459_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467459_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467513_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467513_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579450825_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579450825_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108910_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108910_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426050_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426050_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/5b/5b73a535fe43c0fcf99b66cab6b0cd67/work/3579426055_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426055_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846490_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846490_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467459_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467459_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/40/40f4dcfc90830c579f8e69e5d52de58b/work/3574155051_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155051_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/44/44de7f0de246f90d517a56499972458a/work/3579450850_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579450850_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c2/c2925e6c1ea6bb7f7c5155753e4edb9c/work/3599846445_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846445_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/26/26a0fe9f20cbed8272956ab533f87b78/work/3574109556_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109556_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449672_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449672_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467460_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467460_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d9/d9b9c03f4caa17bcdd9c79824cbf5e4b/work/3579449692_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449692_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f4/f4cc7b0bab07cee08d7268e8cefdb8cc/work/3574108876_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108876_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467488_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467488_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/0c/0c47c3fe0c6dd648145c122a4501a94c/work/3599843913_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843913_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467472_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467472_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108835_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108835_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/7a/7a4f547aae6abedc1ed4d222cd0b9721/work/3574108886_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108886_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/45/459520e8ecd70882ae22efb05ede1055/work/3579451812_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451812_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/eb/eb15169e77d175ed4fbd94bcf8ccd89a/work/3599843979_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843979_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ad/ad6252553af89919fe1dd74cc422e473/work/3599843948_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843948_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/da/daf2da35737092cce69f371ec98b2874/work/3599837449_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837449_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108898_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108898_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467495_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467495_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843957_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843957_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451802_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451802_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/64/64e022c28954c2a2b122a7814fe9d2f8/work/3574109565_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109565_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846476_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846476_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f0/f0945563ee0731725f6bf100d1ec6378/work/3599846485_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846485_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f8/f82a0b8b2de4540c87d748ef5212fd0d/work/3579426063_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426063_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/75/75404d2c35e545220c68c01d1e4f269a/work/3579467489_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467489_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/5d/5df31bb15ab6115b046d36be635c695d/work/3574108930_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108930_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579491562_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579491562_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846408_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846408_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/26/26a6975ab85a7abc5c8a2fc219cf6ea0/work/3574108851_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108851_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/40/407c8dd796e602a2c2a07ad0d1b4e74f/work/3599846493_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846493_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843969_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843969_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846427_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846427_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/39/39ca6f91aa001cb91f570668bfe341ae/work/3579467484_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467484_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/67/671b519a203b5551aef796c74864d0e3/work/3574108769_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108769_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449666_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449666_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579450934_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579450934_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/85/85f9f91da117dc69dc3c19f15dee1c8b/work/3579451804_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451804_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b3/b3ef8962b27c43e543dbbd4cb2391d74/work/3574155047_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155047_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846436_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846436_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/19/19cd4e20c4829e90c962347f2e2a3a3f/work/3574108838_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108838_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d2/d286306b9833d37fc2701a2cb9292a1d/work/3579426116_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426116_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/53/539667a812063a9f4be7bba87372b8c7/work/3574108873_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108873_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155055_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155055_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/0d/0dc8cab4b9402b352c49bad45a211aaa/work/3574108902_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108902_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/18/1898de879de9304460cf0a1e9f828225/work/3574108840_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108840_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449670_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449670_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846515_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846515_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/5d/5dcd8dfaa7d462d69f1d70e84a8baccf/work/3579426074_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426074_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c1/c1b14ebeeb84f3244094e3a7910949e6/work/3579467469_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467469_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/79/791069f5de2054d8296694c2bdba2cac/work/3574108841_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108841_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/34/34f8b77f778924ffbb2d74d61b7bf634/work/3574154995_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574154995_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/eb/eb3b957d9472536aeda4803489e6573f/work/3574108871_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108871_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846421_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846421_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/46/46bb03be66a459b4251f5395e70fbb58/work/3574108891_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108891_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ed/ed67238bd180b891b25110053562c19f/work/3599846511_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846511_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108932_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108932_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d205b8f141f5458bfbbc3c717413dff/work/3599846382_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846382_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108917_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108917_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ea/eae4d863b8ec52c1b55469fece659847/work/3579449674_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449674_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574154997_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574154997_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a9/a9657baae9bd1234a0a418f1d64f7218/work/3574108833_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108833_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846475_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846475_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426111_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426111_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843928_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843928_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108779_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108779_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108844_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108844_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2e069a1206a3820d1daa133fc6fd49f/work/3574155027_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155027_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108763_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108763_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108847_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108847_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/84/842bb197c767d4d0f8e7936f641616e5/work/3579426121_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426121_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e9/e9bebc04f45da3e86363b42684ec3cbf/work/3579449681_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449681_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d7/d717eb8a2963517ec452cceef44382fb/work/3574108774_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108774_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108757_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108757_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/60/6072aeb8741ecfaf16eb9de17c5d200f/work/3599846501_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846501_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/37/37e2e7fea30e2dadfe4c56ac92ea331b/work/3599846431_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846431_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467443_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467443_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/1a/1ae86696f351ad01bc6776dd6dd1f2bd/work/3574155055_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155055_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/fe/fe57a513f5b3593881e428af7c0dec18/work/3579426114_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426114_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467463_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467463_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/9a/9a7aed49b278bb4d077137f46e785201/work/3574108917_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108917_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846400_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846400_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108901_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108901_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846496_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846496_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449687_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449687_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/94/94f518a290c2d59e8b6c1e9c153bb4c4/work/3579426104_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426104_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a6/a6be127a712f3a32ab3e4d9318b5c024/work/3599843892_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843892_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/8d/8d4781487b1fbd1f97b7070428ea296d/work/3599846499_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846499_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108807_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108807_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/45/45d24f76b9d21def291cccad95eca073/work/3599837386_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837386_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108759_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108759_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/17/1799e36bea2714f70bec6b26d5f1e002/work/3574109560_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109560_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/0c/0c5ec917f086b4d3f7044e4bfb2fbeeb/work/3599846519_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846519_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/78/78de752733fd0470d39a81d59d458e1d/work/3579467500_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467500_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846512_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846512_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467483_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467483_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155054_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155054_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/07/0726d452eb67a604dfc3207bb088b8bd/work/3599846405_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846405_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843938_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843938_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843950_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843950_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449682_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449682_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/70/702f5e83aecd8b1618fd41a610d4005b/work/3599846478_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846478_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f4/f43c51e56fabeddf0c59c7246d105194/work/3579467488_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467488_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846516_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846516_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c6/c6da9015d0ea8e2c2fc03724e5b866f2/work/3574108799_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108799_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/1b/1bad2fe088484f34345b3516cba32df6/work/3574109564_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109564_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/33/3338268854ba18791fd9256d3f2b8c2c/work/3574109548_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109548_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d1/d110199e2981346137f477bd9a2d65fe/work/3574109574_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109574_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a6/a6806bfb627b1de86996130690a23186/work/3574108911_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108911_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/18/18a729ed3745b7c538bf0c434ba7e320/work/3599843926_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843926_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d9/d96faf6c70e2f3b97941f4f5d7d7528a/work/3579467511_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467511_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109563_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109563_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/61/61d5b920900c0adaec0e5d4acfcd8d32/work/3579467450_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467450_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467468_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467468_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b3/b3991443766ebeb294938d15890398df/work/3599846380_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846380_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108842_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108842_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c6/c61ff2e3889181b96ca13cf594f12120/work/3579449675_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449675_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846472_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846472_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/9a/9a87695e9d906c6d25cdf9469b8e4ada/work/3574108798_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108798_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467447_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467447_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/58/58815a392a587fac494920fdc68ca50d/work/3579467470_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467470_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108818_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108818_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/82/8240800ae99f24353438e7d9314f9e25/work/3574108821_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108821_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449688_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449688_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108937_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108937_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e3/e336dbfed832f990bd03d2a1dacfff85/work/3599843933_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843933_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a9/a903bbc936edf7800b1cb7a28142151f/work/3579467506_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467506_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/91/91aab8e62529d51224436cb7556c7b77/work/3579490665_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579490665_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/bc/bcf6a0851735969540e3b8feab4f2adc/work/3599846509_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846509_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/82/82575ef0f0e2a87d8462a4ff86eaddaa/work/3599846500_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846500_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579491554_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579491554_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467457_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467457_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108760_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108760_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843973_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843973_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467497_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467497_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/03/0329ea84841f24f3d8db7b388493e252/work/3599843902_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843902_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/12/125000a88b9388eb1675183af5095e71/work/3579426095_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426095_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/60/608caf8cdf9bca6ea79ecae12117a7c2/work/3599846386_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846386_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d7/d7e6b56532fec5b5bb416d6ae4bf6cc8/work/3574155046_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155046_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467490_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467490_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109573_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109573_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/bf/bf248b49695e41db8f5a9ad4cb016f2a/work/3579467512_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467512_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/10/103a7fe5832258a60ff0da126c66fd84/work/3599843969_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843969_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108756_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108756_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108934_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108934_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109539_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109539_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108802_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108802_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/87/87e3c53464d91fd8940f1ae3d3cbe2db/work/3599843978_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843978_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108768_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108768_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/29/2973525ef30dad954caa57054b407bbe/work/3579426117_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426117_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/3b/3bc0821d01b17c17e7c41f7b8eb25f71/work/3599837441_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837441_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/27/27e33e02473cd6190ba9bcdfe222f950/work/3574108907_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108907_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108881_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108881_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ff/ff459493e9c1c37f83ec68da0963b9d2/work/3579426094_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426094_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579491570_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579491570_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/87/873c67628b3bcd9d778fbed7c1b193e2/work/3574155058_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155058_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a6/a6ced4d148fd37c57689dd491624c008/work/3599846449_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846449_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4e/4e0ed78a6634bd97559c1d270e25a611/work/3574108855_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108855_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d6/d643b65e39c6ceaf3c62528f7a02d25f/work/3574155017_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155017_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467444_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467444_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/6f/6f99cba6f37e0fe5c81ff18b958e627f/work/3574108943_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108943_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/23/2355434e7b67624ae1093cfc235aae14/work/3579490320_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579490320_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108809_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108809_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846433_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846433_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846398_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846398_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/71/713972e961967f92493faf50735bbcf4/work/3579449690_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449690_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e7/e7f2d4a71497b7fc0eb205ffc947d657/work/3579467472_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467472_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ab/ab9baada9805b5973d7ded4921d96f5f/work/3599843957_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843957_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2f81178016331899662d84beeb82174/work/3574108900_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108900_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846419_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846419_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843963_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843963_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426124_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426124_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109558_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109558_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449686_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449686_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846442_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846442_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467476_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467476_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/79/79b611284e7259d0d0ccc57974f9483b/work/3599843936_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843936_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449684_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449684_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467440_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467440_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426077_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426077_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4c/4c12516678cd294b88d5d3be7fc33e90/work/3574108909_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108909_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/96/96c156ea284d0800920f2ab0eb4862f7/work/3574108815_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108815_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/cc/ccf20f3602a661b761632efff1cd0de8/work/3579467515_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467515_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/bf/bfe1c6fdf0933d46c298f8febfe33f85/work/3574108802_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108802_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/42/422494fd335a983c9e517a90ae0f181b/work/3599843970_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843970_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d1/d10170bd2cf673012ba77658103c35e9/work/3574155033_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155033_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b5/b570b91c3fe2c6892246bb53bf140c10/work/3599846465_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846465_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/38/3891cfc197f6d2588978acdb9157cc23/work/3599846426_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846426_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574154993_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574154993_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e4/e4531c803a46c7d0b5cfbbc1c86b72c0/work/3574109549_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109549_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/21/21c841403b5a81cfaccd0e29fba80225/work/3599843965_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843965_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108899_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108899_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b3/b33a574e0f36f8cdc3eeff045dc61705/work/3599846464_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846464_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/fc/fc0c19954d6ef7ded0b4875f62b94921/work/3579449673_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449673_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846425_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846425_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a0/a0a7e7bf3b295fdbd0d34569836d6c2f/work/3579467486_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467486_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a2/a2ec92b2b1da8b84a86dd90240aacb44/work/3574108915_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108915_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/6b/6b1481f4099366ae4a7fcce35784c72a/work/3579426082_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426082_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108810_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108810_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449675_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449675_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/67/67eb68e26a0e45ee7d2d728af9706d21/work/3599843904_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843904_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109556_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109556_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108875_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108875_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843941_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843941_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/de/de0498c7cba0b0aa123f47b104ba2736/work/3599846521_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846521_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108915_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108915_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843918_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843918_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/55/553427e38dd456f2b7ba0536719160ed/work/3579467447_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467447_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467461_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467461_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/5b/5b3e260d4a6d9211714753d55de19676/work/3599837426_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837426_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109565_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109565_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837433_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837433_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/0b/0bcd640bae8efe85bcc85ecfdac18368/work/3599843911_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843911_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846417_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846417_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c0/c0711450ac2807fc747e371d7426b084/work/3579467508_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467508_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/9b/9b8eba802a8534647c22bb6e68a18ffa/work/3579426066_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426066_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426085_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426085_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/53/5316d69707ae517dc15d45fe622900b7/work/3574108823_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108823_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574154995_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574154995_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ad/add58b94d4ca63f835cd67702dbb79fa/work/3574108918_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108918_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/5a/5accefa53f4d8b120bcc5315f4121a3d/work/3579426101_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426101_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108852_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108852_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843905_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843905_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/9d/9d9f972040901ea77e79eaa7d0af9b43/work/3574109568_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109568_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426088_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426088_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/11/111abd8020ba0e4b0a55c3fa1b0c2ef5/work/3599846385_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846385_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/72/72e042dccb2845d6b7e512e533eb7b2a/work/3599846438_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846438_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574154983_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574154983_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449685_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449685_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ee/ee0056f6e131dda4c5fb6ae5c3d38824/work/3579467491_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467491_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108823_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108823_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846418_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846418_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846434_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846434_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108895_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108895_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449679_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449679_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/77/77b2e5d3cbca04a4edb2185408071f39/work/3574109573_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109573_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/16/16ec85692de4b1e3f14e33d1c3e722a3/work/3574108777_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108777_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426096_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426096_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/92/92a31a56fca7b94d7eb290de0b504fbd/work/3574108896_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108896_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/80/8059be233064aa2a559cdc0f9e4c78c5/work/3579449684_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449684_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/8d/8d91b045dad1273177809743cae22086/work/3579426092_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426092_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467498_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467498_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846471_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846471_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109566_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109566_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/eb/eb29714a30e7172c81676bd5af54aa06/work/3579467502_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467502_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846469_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846469_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/74/74119bd2e129f345748421682d913103/work/3579491554_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579491554_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843960_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843960_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108920_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108920_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/97/9780312d8cf1fa2d508885b27df6affb/work/3574108890_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108890_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843980_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843980_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/be/bedf78fca9ba55ea9807b498653b3b49/work/3579426084_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426084_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426062_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426062_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/46/46e12f2e8a7eb5fd07c9ee8d4396d314/work/3579449679_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449679_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109549_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109549_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108868_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108868_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108914_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108914_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ab/ab22fb789347adbdcf0cf8dc947dc5e4/work/3579449668_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449668_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467458_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467458_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/21/21f20d92e9da75481ee18ab992ae1720/work/3579467464_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467464_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426086_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426086_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574154994_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574154994_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e4/e448be7e10473420b320a2d044a2a117/work/3574108760_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108760_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846404_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846404_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846455_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846455_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/09/09a3a2f71bffac50c5eddd8fa5b9db1c/work/3599846516_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846516_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843961_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843961_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4b/4b133d373c04b5522c31599053bdcaed/work/3574108801_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108801_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108936_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108936_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846413_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846413_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/87/87f9c6ee205bd3b6428630ec14c66205/work/3574109522_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109522_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846389_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846389_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/7e/7ea65e5ea9912f06cc13e35427106243/work/3574108912_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108912_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f9/f9cf07ca6a4155cfed61381d00d01a5f/work/3599843960_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843960_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426117_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426117_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846462_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846462_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/8d/8d09f5c603d788b94d80352b709d12c9/work/3599846389_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846389_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/08/08c6473bdbb70ac0018a91a88e1fa669/work/3574108803_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108803_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108889_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108889_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426107_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426107_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/53/53c4c20a5daef434396db35881e60422/work/3599846429_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846429_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846517_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846517_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/96/966c81003583a3340094053de9d2394e/work/3574108847_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108847_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108870_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108870_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/25/25c27bdb422b9b62a716080274a23935/work/3579467430_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467430_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e3/e3be1628b29163fb3f092e67c71e804e/work/3599846461_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846461_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a4/a415847eae8ee77c89e7beb8c110746b/work/3599846456_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846456_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108783_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108783_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ff/ff4e1782d7b21b8bb8756458b9a146c9/work/3579467438_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467438_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843937_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843937_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108902_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108902_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/76/76c63ebdb65976cc6846ed78011e7b9a/work/3599843929_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843929_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ac/acc5c6df1798ce1c83d4d9240e760634/work/3599843920_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843920_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451807_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451807_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/6a/6a4d8807072ceea20c90db799bcb7224/work/3599846430_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846430_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/12/1221ee2b7f816f05a8956a2050e161e0/work/3574108884_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108884_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467473_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467473_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843943_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843943_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843890_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843890_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a9/a984f8c598e5634f4d88591b12d092d5/work/3579467427_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467427_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426058_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426058_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846525_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846525_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f1/f1459ef98c17fe5136e501b7b55583d3/work/3574108846_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108846_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/89/895e43b9814b7808200306b47c7b1836/work/3579467493_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467493_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467429_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467429_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/30/30d4326d84c7294f345455e6cfedc4a3/work/3574108848_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108848_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449676_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449676_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846451_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846451_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/9e/9e4f01209d44c0a8e433970cdbcc4224/work/3579491578_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579491578_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b9/b980d725a47994d1e6f8fd0edb5b8543/work/3574108905_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108905_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/dd/ddd8e75040dc1c1f7a58049b3e727342/work/3579490326_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579490326_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/dc/dce605ed587f79749f517b2574a59673/work/3599843909_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843909_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/45/45b338110859c059052dbb762a8bfc85/work/3599843975_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843975_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/10/10a218e51c98e6a9e5825a6e01d4213c/work/3574155020_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155020_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/3f/3f1a0485f2f92f26503772ef319130c9/work/3599846492_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846492_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846495_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846495_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108903_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108903_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c0/c02e59ee70dae8327b7ff0310e89edc5/work/3599846396_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846396_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843889_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843889_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/82/8259f9c80482d662656dadce6b5eaa04/work/3599846522_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846522_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/94/94b819923aae5b92136306db474c9e96/work/3599843889_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843889_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467510_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467510_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846519_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846519_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c7/c7c0c0e9b29eb1be07b015d979f5aa41/work/3579426124_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426124_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846486_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846486_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e3/e3ad0e3f2ad6054c52a31b41d1b225f9/work/3574108875_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108875_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/3d/3d7bfc7b7ef94bb90bc535da6f4a2a49/work/3574109566_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109566_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846518_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846518_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/6c/6cb2a7aba1ebfbee94ac4fef96aef891/work/3574108836_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108836_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/70/70ca5bf89a8fab1a7abb2326db352281/work/3579449683_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449683_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467485_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467485_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574154986_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574154986_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108860_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108860_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e4/e4417c1ad3f7d4d16ef83a283849360d/work/3579467468_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467468_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/de/de664756e37ecf04aa3c42580d01b748/work/3599843931_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843931_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451810_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451810_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/82/82ef40e2074f1cbd16cf5df58bab0cdf/work/3599846457_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846457_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846438_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846438_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846449_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846449_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109560_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109560_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846506_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846506_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451796_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451796_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/51/51a763da8b85c250481a9c4f7501d369/work/3574108772_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108772_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/63/63d08e1a1df5bd984efe08dd7621bb30/work/3574108788_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108788_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108785_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108785_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108887_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108887_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467491_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467491_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/af/affc05a7617678bad742ec53accb4b2b/work/3599843925_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843925_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108939_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108939_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4e/4ee551113c191d4596f5ed115b6121b8/work/3579467476_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467476_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/6c/6c964fe57790cff8dd8976eb24391881/work/3599846433_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846433_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a0/a086fd3f1f3c738c4f1cdbac7b47b73d/work/3574109543_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109543_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846423_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846423_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/81/811773d5fac805d76d2d868040017b22/work/3599846379_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846379_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843892_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843892_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/df/df92adb0b59e7a973db70bc22fa5ddaa/work/3574108757_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108757_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/09/096650af4a2591de9c41376c5fa48d40/work/3579451799_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451799_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109548_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109548_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/5c/5c060942fa91f378d90a55033b67be88/work/3579426120_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426120_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467480_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467480_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/9f/9fad1c86b219223bc137de52de31988e/work/3599846491_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846491_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108817_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108817_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/18/18554bccf238224cfec01b0bab6a6288/work/3579467452_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467452_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426098_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426098_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109570_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109570_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a0/a0fc286649eab6b3ea9f2fd82e532a6d/work/3599846442_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846442_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451794_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451794_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e7/e7731dbeb83faadc12d5f115c85c68b5/work/3579451810_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451810_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/5c/5cb1cfbc36cde70799943730009a7710/work/3579467507_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467507_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467517_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467517_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a9/a9331e6a7dda74af6baaee4855edaab1/work/3574108856_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108856_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846473_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846473_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/35/35ce765126b4232c58b09a4301958147/work/3574108862_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108862_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b3/b36021c59a6fd75e6fea885eef7396f0/work/3579426064_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426064_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/24/2438b86e04eb5a33bb663f74473354b2/work/3599846474_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846474_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b8/b82c1ccaabe3c2287086494a61a01126/work/3574108830_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108830_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/0b/0b9133beddd3d60e002dd8bb1dc07917/work/3574108916_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108916_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843912_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843912_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843959_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843959_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108814_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108814_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e9/e90747ba8d87a8c5d5ddab0eff3ce610/work/3599846412_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846412_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467474_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467474_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449692_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449692_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574154991_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574154991_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467427_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467427_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837449_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837449_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108832_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108832_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843898_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843898_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108906_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108906_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f3/f37f16b7e3245b38965194c5a8d04009/work/3574108867_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108867_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846505_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846505_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108838_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108838_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579491594_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579491594_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/0e/0e314094e60ce6573e57a6677632c955/work/3574108839_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108839_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846509_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846509_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d2/d26266a7497f9a68ad887b90fe19308e/work/3579490360_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579490360_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599836363_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599836363_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b8/b84ac4ae0aafe729512fc793a6a53ff6/work/3599846524_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846524_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/7c/7cd0db0611bfb8417f5c112e3215c75d/work/3574108783_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108783_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/35/3595ff853c76fa629204e145b8b979c1/work/3579467428_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467428_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a9/a94b1a59a81f89172572939177f496a7/work/3579467436_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467436_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/2b/2b8c56cf37357ddb5e5dca0863750b56/work/3579467479_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467479_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846379_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846379_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846403_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846403_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/5a/5a9c325f5943c2afbb71a3b369b0e77b/work/3574108885_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108885_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108830_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108830_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467477_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467477_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d5/d576ad675bedfc9c474bbd0fe5a88750/work/3579426081_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426081_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426095_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426095_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b8/b884a40c6187f1a9fac3573da9a21e11/work/3579467437_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467437_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155051_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155051_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426118_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426118_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846511_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846511_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109534_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109534_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b28b981d3ab0ac2cfb8cc88c98452883/work/3574155024_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155024_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e1/e135c77683f1d3b2cb6ba843230ab6fb/work/3574108877_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108877_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/09/09a10ae3f9d8314f93e6df721739e897/work/3599846475_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846475_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d5/d5443f2c04e9c0e865b25a70ab792388/work/3579449682_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449682_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c3/c31909882d382bb71581e1c51770fb65/work/3574108845_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108845_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843904_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843904_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/42/428df9a254c91ff6bc1c20633fe34dac/work/3579450934_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579450934_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4d/4d55ac411315753a4ddace45e1139a52/work/3579451809_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451809_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/37/37ced2e1dbb730152f66da747d76cd0a/work/3574108861_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108861_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/39/397939330edc42415101eafdd7f4256f/work/3599843945_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843945_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108893_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108893_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108927_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108927_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843956_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843956_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846386_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846386_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/2c/2c499739676b6123724b832427be996b/work/3599846477_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846477_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e8/e8bff24d16c185f18a61eaa1092f1817/work/3579467478_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467478_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/35/3521167a80f77185e58cb071eac476e5/work/3574108844_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108844_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843933_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843933_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/23/23db138436fa8ee090e5b3385af07178/work/3599846455_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846455_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/05/054538c2977ad51c5fa7f8ae47c8d248/work/3579449665_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449665_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108878_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108878_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/6e/6e21a64e8c3f88c6a62ab16451eb0d6e/work/3579467460_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467460_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/71/71b3b0a70daff7f37ef651601daac444/work/3579426118_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426118_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467449_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467449_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109540_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109540_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467426_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467426_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108857_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108857_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/9a/9a3b12f0dd41dc288d583fe543554a17/work/3574108926_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108926_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843921_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843921_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108824_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108824_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109528_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109528_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108869_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108869_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108944_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108944_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846500_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846500_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467481_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467481_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108825_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108825_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467479_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467479_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108839_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108839_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/98/98497b06aa8ee26c926431c757712aa4/work/3574109545_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109545_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/37/37c81c92d9c0eb7f1313aecf7ec57a1d/work/3574155019_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155019_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467446_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467446_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/55/55805fdeb92ea13ec277b90cb72a8609/work/3579467463_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467463_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467465_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467465_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467435_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467435_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846414_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846414_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467436_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467436_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467502_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467502_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843936_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843936_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/dd/dda4cd4932d275af73cc2289ecbcfe71/work/3599843973_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843973_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846463_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846463_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/58/58ab397b1d9c2b5a0b6a9621bc282470/work/3574108762_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108762_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/2a/2a1b2697a5ba873e293b1a8e583b0ff0/work/3579426109_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426109_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426123_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426123_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/77/777e502d273a43c20d1124a19f2b23a1/work/3574109553_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109553_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467494_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467494_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/88/888bbf8c47f724913289c911135a55b8/work/3599843953_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843953_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/74/74d0c4605c6fbff52a9f5d0bff61f17e/work/3579426097_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426097_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/38/388e7f33e3712b3273f77b55350f583c/work/3599843906_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843906_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843962_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843962_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846513_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846513_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/62/626a7c2ecb5f7de08f1d2fa98516b1ab/work/3579467453_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467453_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843919_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843919_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d0/d01e054e30102660b6a3b5840503d807/work/3574108834_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108834_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843922_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843922_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/92/92972eecce1c900596cd89fea7839e56/work/3579467431_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467431_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/90/90a8d1960ae84df3d1752b5f147695f4/work/3599846390_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846390_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843911_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843911_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426051_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426051_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108912_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108912_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/57/57a77747609e6681c7c8126981b6bda9/work/3574108933_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108933_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ce/ce1ad9c5e4f74823df903b48e6330669/work/3579491586_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579491586_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b7/b73b2bb81501279942fd6e65b08ee05a/work/3579451795_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451795_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/0b/0bcfff37ee93b7d7e0d57e26c67d1325/work/3579426086_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426086_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846431_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846431_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843945_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843945_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426061_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426061_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/7e/7e70122201faa70cee36857c0e286e95/work/3579426105_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426105_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108778_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108778_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108877_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108877_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843978_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843978_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846453_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846453_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f8/f825bad87a37345a4569923b0939a23a/work/3599843964_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843964_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467450_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467450_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426071_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426071_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d6/d6c58bee1075c81e9fdc80ae8722ff81/work/3574108901_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108901_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/50/5064bc1e844454b9a2e3fe0930ec6aec/work/3599843944_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843944_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843931_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843931_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579491546_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579491546_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/23/23507bfaebea2d1d0ae37127600925c3/work/3599846483_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846483_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108907_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108907_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846494_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846494_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b5/b5ac598ae54f9d68efee39605a3bfe41/work/3579451796_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451796_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108788_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108788_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843914_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843914_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467445_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467445_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f9/f9bb700fd33f6d26e19bb9a180e96aff/work/3599843967_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843967_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155036_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155036_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426091_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426091_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/1e/1ef728a8b1a4b40ba18c8ebc45d5c882/work/3574108895_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108895_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a3/a3d019bfe8ea315418ad6ae5254b1dd8/work/3574108860_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108860_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ec/eca4d1c4b82b38ae8a8ac2b4b6d4202d/work/3579426110_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426110_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/88/889eb695136c48c1788415316215af29/work/3599846443_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846443_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467469_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467469_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/6e/6ee501f74b09849f9f86ad788ea0ce59/work/3579426100_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426100_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108769_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108769_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e3/e35483f1e7c845400b1078af521db3f5/work/3574108782_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108782_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/97/971077abae7743d36ccdfd2736495d86/work/3574108820_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108820_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c0/c02723c2cfed55b26433c6a3849174a3/work/3599843893_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843893_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/66/6606b434453317361cecaedcd24afa73/work/3574109542_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109542_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/cf/cf8afd0deef3b03fe640fbf45a604f2d/work/3599843980_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843980_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/cd/cd250868f181dc3909748e136487b501/work/3599837394_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837394_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843974_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843974_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108863_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108863_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108935_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108935_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846428_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846428_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f4/f468e3b31afabb568ef398dcff3915f8/work/3579467480_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467480_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d6/d643b4a8d71860e1fae48bd0d7b7e246/work/3574108865_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108865_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449671_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449671_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467518_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467518_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467500_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467500_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846460_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846460_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ff/ff243876a6ca75589ebf256dbc10f839/work/3599846408_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846408_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/44/4436961ac1e53f47522b9d52a7a784b8/work/3599843949_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843949_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/63/63a9dd9bacf3208e616b1003bbef943e/work/3574154993_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574154993_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426110_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426110_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843976_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843976_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843944_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843944_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/fa/fa596b992cfb86109e70c06194a43947/work/3574108899_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108899_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426116_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426116_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155016_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155016_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108873_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108873_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467455_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467455_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846426_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846426_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/30/30a8909159d19a495b2cbc09c0d445b2/work/3599846437_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846437_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/02/027f85dee9027052e61f786f3ce3c02c/work/3579426077_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426077_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/98/98364799e205ac9419e2c38ad03b44c6/work/3574155053_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155053_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/22/2294d45996bede09dc33db43d76e3f77/work/3599846479_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846479_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108836_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108836_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/1a/1a382843ed21d89e56064da737966269/work/3599843899_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843899_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108942_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108942_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/37/37c12c7a298eec464b20fbee90c50e89/work/3579426051_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426051_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108755_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108755_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/3a/3a035be2e110efd7b20942903bd62e6a/work/3599843940_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843940_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426084_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426084_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579490665_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579490665_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108799_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108799_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108904_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108904_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155050_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155050_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843935_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843935_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108945_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108945_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846391_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846391_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843932_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843932_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/69/69b8753a38704994fa44b6654b5a1ee0/work/3574108805_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108805_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/64/648d17fcbfdd985e5eed25f6b17a52a5/work/3574108768_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108768_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846504_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846504_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/24/2493d133caa926a4aa01ff948002d2dd/work/3599846531_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846531_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426099_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426099_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108837_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108837_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/02/020e9c354d063641038cbc2d708f4759/work/3599846476_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846476_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155059_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155059_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109574_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109574_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846401_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846401_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426055_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426055_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d5/d5c76c6830573c609f1754cd83463536/work/3574108778_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108778_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846382_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846382_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449690_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449690_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467496_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467496_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108764_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108764_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/90/90644d46e054709aa49fe1baaaf54f72/work/3579467461_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467461_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/07/073d5da1ea569a6f20e4db0c0e98e5b2/work/3574155048_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155048_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f6/f6c37a618b3a5971b5c7f72e575f4fe4/work/3599846404_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846404_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a3/a30ce17b3f5609ff4600c21faf253d94/work/3599846411_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846411_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108820_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108820_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/82/824f731d6f494cc65be79b78f33f36df/work/3579426075_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426075_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155022_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155022_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467431_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467431_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/14/14a33b0ff4f49bf0b8140b838be1f055/work/3579467433_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467433_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843925_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843925_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467501_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467501_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109535_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109535_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d1/d115f8475daaf7e681e7068e80079c09/work/3599843903_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843903_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467428_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467428_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843964_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843964_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/69/694423e5b2b9a435f3b5c4c8379db42c/work/3579467471_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467471_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108782_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108782_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108845_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108845_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846532_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846532_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426105_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426105_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/aa/aa0240441a66b72d82589db64a3bb337/work/3599846498_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846498_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/13/13274c38e40050168902219a63606088/work/3579467503_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467503_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/6b/6b3aa6e1e621655c091ff1af3b13e277/work/3574108903_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108903_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/76/7634004524e8cb3632d539c3c8dfc32d/work/3599843971_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843971_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ea/ea6d7da6f15803b39c800b87374417a1/work/3574108824_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108824_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843977_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843977_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451801_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451801_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109543_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109543_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108816_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108816_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f3/f32d31be97367b7bf22fd0223164e0b9/work/3579491546_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579491546_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579490669_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579490669_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/1f/1fd11733b442e0a5c2a0c6b016fb095c/work/3599846517_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846517_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/23/23e41d4c9c2fc52a266f12324d29c432/work/3599843943_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843943_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846415_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846415_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846396_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846396_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467503_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467503_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b7/b7bfb36e77de9b4f4082c24c34c6bf4d/work/3579467441_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467441_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/7d/7dbe268e29b45a2acb308528d1a79a8f/work/3574109572_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109572_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426066_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426066_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108762_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108762_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108770_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108770_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/db/db315ab4910ef3b96a52d53d4c33ac2d/work/3579449689_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449689_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/89/89b250aa4cb29fefe96ce8746580fd7e/work/3574109569_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109569_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846466_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846466_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837370_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837370_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/2a/2a5a79d28d90ef545f7225ca53df93dd/work/3574108937_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108937_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/63/63e317d046e5975666be7d17a5b48108/work/3574155016_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155016_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c8/c89250f6d0e7e2703f0035df33d9358f/work/3599846448_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846448_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/cf/cfd1c53bdd03b9a1bd90bc7aaba64c25/work/3574109544_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109544_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/43/43ee452140a87beb8e26af1e63cf1fd1/work/3574154992_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574154992_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155023_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155023_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108861_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108861_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846390_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846390_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449668_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449668_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d6/d63508729b3123dda5be5ea6b69cf25f/work/3599843919_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843919_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426122_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426122_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f0/f02d2edf32e730678256d42356813df5/work/3579467490_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467490_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ae/ae5caac1a4b13bc5c0082f664ff6fd35/work/3574108756_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108756_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ba/ba0fa1eb9ddfc3ba983f27dabec1d85a/work/3599843952_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843952_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843929_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843929_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108833_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108833_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846393_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846393_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449683_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449683_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843920_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843920_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846402_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846402_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467492_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467492_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4a/4a851ed53ff0f1ca32376a272f8f955e/work/3599846394_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846394_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/9c/9c008816a7f44d82d181bfdded295d7c/work/3599846489_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846489_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c6/c6ba9bacae3fea0b30bd81c28b024283/work/3574108878_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108878_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108892_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108892_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/fb/fbc64de27daf9ac798ab392c41bda427/work/3579426061_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426061_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467508_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467508_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f1/f1b8568a15915302000af2039691fac2/work/3579426108_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426108_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/42/426b06f9a8f8cd4a1a77c47171ac0d90/work/3574155054_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155054_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e2/e2bf8c6ee6e0d94e3d6dc0bf76d1ba94/work/3574108894_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108894_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a9/a97c18d83873caab8b3040f5acd3f7e5/work/3579426111_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426111_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108883_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108883_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846392_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846392_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f7/f7b71a96cc2a176bff773c60f256e71d/work/3599846518_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846518_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109572_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109572_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579490323_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579490323_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467509_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467509_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/99/996195a9fa5402e39434fae817ccbf54/work/3579467429_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467429_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f8/f83d73cdd1f63a0098556d6131d6da56/work/3574108853_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108853_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/55/55551490c7bacaf2a2b71a0f9d5ffab7/work/3599846439_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846439_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/1c/1c359af4d71374e863040cd1112228fa/work/3579426102_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426102_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/9d/9dbc7d9aa66a33d8cdeae0f3468b8fe2/work/3599846480_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846480_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843891_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843891_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108886_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108886_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846526_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846526_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108829_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108829_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c9/c947ced87c7d82c7e9b633e01015f76a/work/3599846420_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846420_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/5f/5ffaf252ab88c547b1bc9d097ee84063/work/3574108944_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108944_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/3b/3b5b546fb55faa70ede9fa0af28be9a1/work/3599846384_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846384_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109537_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109537_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/22/22639b8410c6a07e4d2fac20d781a7f2/work/3599846486_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846486_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846395_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846395_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/1d/1dc887770344805b1a7f35ae194140d6/work/3579467483_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467483_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846407_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846407_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426075_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426075_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/0f/0fb752d0838a1f96e8f4be4775c693b7/work/3574108859_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108859_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/2f/2fd13d629d1f1fc2811b6cdcc5b113ce/work/3574108897_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108897_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843942_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843942_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d2/d249d534f3a97a050732c7baeab073da/work/3579467520_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467520_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108900_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108900_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846468_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846468_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ae/ae59dfbfea53ca193d6dc403dffcd32e/work/3579450862_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579450862_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/93/9339ed02686e30cd333f440bd639131e/work/3574154997_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574154997_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ae/ae98c5b52499b0624c4ff09ba2f658c9/work/3599843924_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843924_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/73/73ad2d007bc3cda351c09b6fb4eb66d8/work/3579449666_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449666_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e0/e0580e6bfc10931fd3ed44e80c1ded3d/work/3579467445_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467445_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/6f/6f77e45dca0496ba78570fe4ad13d044/work/3599846460_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846460_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/10/1014b7e5b742f763f568800b5de7fe85/work/3574108904_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108904_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843896_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843896_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449691_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449691_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d8/d85d5bee5e1a8c52fda5480bc8eb47cc/work/3579426078_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426078_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f2/f2a5de8ee3a5ec9b6c12e13695a60287/work/3599843974_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843974_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108766_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108766_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426067_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426067_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108804_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108804_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843910_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843910_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d1/d1ddf1fc6411af33cb6acd862c73f3ca/work/3574155059_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155059_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/6b/6ba3150b242111ca119d51bf1a049cdb/work/3599846495_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846495_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/1b/1bc7daa0c760e71ad71ee00fc4dd72c0/work/3579426122_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426122_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ef/ef328e8ebc681b376cda6a639d6adddc/work/3579426096_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426096_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/72/7234eeb71b16457289583f9589099f50/work/3579467514_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467514_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155049_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155049_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108792_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108792_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155048_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155048_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467512_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467512_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/3c/3cc5c4c4164a78289b509ced68d32c8d/work/3574155014_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155014_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/61/61f74957c947983bd77031b86047796d/work/3579449686_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449686_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426100_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426100_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2439173bfe888784258a555ce819abe/work/3599843950_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843950_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467439_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467439_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/bb/bba514ebe1f93ba21bcc944f98866f81/work/3599843908_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843908_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/3d/3de5064bddd262165d9b74f075c9b85f/work/3599843898_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843898_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ef/eff3333289016b22c8d94b0c3842bf7e/work/3599843954_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843954_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846492_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846492_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843970_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843970_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/bd/bd971f48b1c8f175700e5383952a76df/work/3574108864_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108864_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846514_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846514_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/7b/7b00bca34f808c96a2dc18e96a26543d/work/3574109532_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109532_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108890_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108890_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846378_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846378_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451809_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451809_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/5a/5a29ac2fc8e0b30743e7a2b9026796d7/work/3599843972_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843972_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426103_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426103_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/07/0761c626d3e196d458997cb15e81a5da/work/3599846497_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846497_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/0d/0dba7c1f68127cebb9a3c44409fd8b78/work/3599846400_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846400_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/31/3112f3248f21f619d96adc27673f5fd4/work/3579426089_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426089_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/39/39dad66d833e580a2c4f55700978339b/work/3579467456_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467456_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467475_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467475_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e6/e6dd5e4c5dd8fba394080dbf5358fe65/work/3574108793_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108793_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846412_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846412_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f2/f28dec63eebb3e19efc0e3b6ab7fa73f/work/3574108858_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108858_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/73/73b2e0bb06b9e9d9468c79a2c85a4c51/work/3599843976_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843976_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e1/e14c34202c93a918d7a9545a34b6a0e4/work/3599846463_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846463_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846477_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846477_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155019_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155019_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/5a/5a945633f9307658fae1d33b5ff25a33/work/3574108811_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108811_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467438_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467438_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846452_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846452_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c4/c4d29ff194ddc50c9c080462d4aba85f/work/3574108789_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108789_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/06/06d274df3e223e737f4561b752aea715/work/3574108854_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108854_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/41/41d6c53f4624144eb3a5a7930dcb70f2/work/3579426091_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426091_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846464_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846464_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/70/70d6bc5815d8d85b2224e40e5fdc44ad/work/3579467454_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467454_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846385_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846385_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108831_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108831_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/55/551daa03fa997c08b5b7511a11bf3ed0/work/3579467513_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467513_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/bc/bcc03608c0b99f2d554fa098cb146f60/work/3579490671_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579490671_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846502_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846502_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/86/863e7085490c6b3a24f8097133057fd9/work/3579451805_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451805_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467516_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467516_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/77/77713d3effa58ba2cfd4b197ecb84fda/work/3599843947_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843947_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108919_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108919_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/9a/9afa9dd163018dec87d5363210de8d00/work/3574155018_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155018_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843982_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843982_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/1d/1dbfe4f999aa75d792aa601244dfa126/work/3599846432_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846432_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/03/035a59b4297150e48b5e6b7d16daf192/work/3599846435_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846435_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/28/28f43a7507c31898fd5629b5d0b29ef9/work/3574108940_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108940_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/87/87db21820a2bf379e42daa5f5c745461/work/3574108857_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108857_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f2/f20973fd25314557ffe324acd5d45f4a/work/3574155050_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155050_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579450917_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579450917_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/33/339e6854d779a0e77b7970e4fa5871fb/work/3599846515_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846515_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846410_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846410_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ec/ec3567e3f351ccd540ea1834237e9d17/work/3574108892_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108892_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/85/85497ab4946324ab386420c4cba08ed0/work/3574109535_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109535_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/79/79fd536dd4064d0936725f15df6933b7/work/3579426087_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426087_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843899_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843899_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/17/1751561ee47a04214d1a678ce3d67a22/work/3574108835_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108835_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/30/30b1e90aabce6a6ebe968f9a752cba58/work/3599846417_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846417_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846424_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846424_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/76/76cb16717c6b3482719af8f030bfffae/work/3599846425_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846425_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108846_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108846_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467482_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467482_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/46/46680775dd74e5e5b3c7aea9e58ef2f7/work/3599843910_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843910_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/23/237d4a8bfd6317b901d159d5fc42c3cb/work/3599846424_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846424_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/bc/bcfd06a636f303213d1c32053bfaf8e3/work/3579467481_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467481_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843893_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843893_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426053_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426053_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451803_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451803_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108780_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108780_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846483_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846483_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/9d/9dba1777843d00a0bbde2ea4aefe213f/work/3579467466_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467466_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/91/91bbe9ccaaa494af871e039e6ae1065e/work/3579467451_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467451_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108922_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108922_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109569_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109569_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a0/a00258a032fe414642f53970c7680567/work/3574108874_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108874_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846456_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846456_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155035_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155035_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846521_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846521_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108841_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108841_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579450880_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579450880_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/da/da9a6b5227a5583dc2f63821a05bf3f2/work/3599837417_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837417_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467433_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467433_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449667_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449667_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/60/60ea6a851ac8b3b53ae8e7dd4676f63f/work/3574108776_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108776_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579450850_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579450850_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467430_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467430_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467511_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467511_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/db/db9f4530daf7b0513d02631c8bda1f9d/work/3574108796_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108796_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108828_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108828_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/5f/5fee1d1a87a8371856eb72f97f6823ac/work/3599846487_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846487_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579450868_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579450868_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/15/15791cdb63e9dc90e161a5bf7f6e4bbe/work/3574108863_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108863_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426052_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426052_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426119_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426119_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a1/a12888c939e368187148983b3aec7f6c/work/3574108832_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108832_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843926_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843926_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/90/90f7657926df09afc4b78b85da860322/work/3599843941_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843941_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a6/a65715d50cf1c98ddb16b6f80d1a721b/work/3574108817_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108817_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/fa/faf9ea4d86994b75670eae4b0103b3dc/work/3579449667_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449667_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/fe/fe046cdab1d64c03064a89adcebce4fb/work/3599846502_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846502_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/88/8858f49a9c094e53336d22be87bde345/work/3574108927_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108927_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/6f/6ff4499dd393b6de033c82421a627b86/work/3579490669_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579490669_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846480_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846480_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108853_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108853_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467499_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467499_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467486_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467486_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451811_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451811_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843966_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843966_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108767_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108767_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449677_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449677_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109522_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109522_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c4/c4ac07164028f9dcf641d7d8ecb626ec/work/3579450917_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579450917_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426089_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426089_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426102_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426102_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/57/57059fc73526e871ffc333591a4fe15a/work/3579449680_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449680_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426108_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426108_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846450_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846450_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/46/46ddfccd92098243d7114b3df9b81b9e/work/3574109536_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109536_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c8/c87ff374cdc1915c367adb798bef18ba/work/3579467432_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467432_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109541_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109541_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108851_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108851_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108858_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108858_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/65/65a4ac6366ac9089f2c3253f51c67a5e/work/3579451798_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451798_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846467_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846467_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b8/b8315752df6cb0140e6b74556f4dd5ac/work/3579449685_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449685_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a5/a5d3c6ec1c32c0ec0897045e43acec03/work/3574108934_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108934_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108926_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108926_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/21/21a631607f5c90671b1489818adc972f/work/3579426123_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426123_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/89/89d45e019d3e2f90c752a468650f9102/work/3574108780_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108780_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/22/2223a3e2ac1267141a7f487dc3c886e5/work/3599843895_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843895_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/59/592df862b564eeb2c14589f0c212f602/work/3599846469_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846469_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/dc/dca8a230542f501c4333547f7d346fe2/work/3579449669_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449669_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e7/e7f3e2aa961e964eac9af1cf6d24e43c/work/3579426073_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426073_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/99/996fe032ead400ce4b7f09d0d329cae3/work/3599843894_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843894_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ed/ed729d47f0509e9ccfe7670f48d19c06/work/3579426058_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426058_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/57/5706aa16a2a55349fb264f9604ad9a69/work/3574108842_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108842_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467441_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467441_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467478_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467478_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467519_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467519_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/54/549bff85bd98e6dd01591731a975ac54/work/3579451811_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451811_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/5d/5dba8f422355a497b412cdd7c66f6d6a/work/3579467455_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467455_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/bd/bd04119981037d85d186212ae8415edb/work/3579426113_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426113_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/85/85e7b862d2981a1b073b954fdb007b37/work/3574108819_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108819_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108865_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108865_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c4/c4cbf87e7f8f04298bdb415c6af1e668/work/3574108936_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108936_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846422_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846422_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/samples.json" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/samples.json"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/07/074d06c8295715c8311d2002b360d07a/work/3574108775_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108775_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108798_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108798_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843897_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843897_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/2a/2a9dc0faa08f00fd8fe3a036a5131a5a/work/3574108829_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108829_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a8/a8f4a126673a16e24b1545205e7d236b/work/3599846392_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846392_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846465_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846465_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ac/ac828b45a62369b23eef35289f28dbcc/work/3599843968_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843968_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/91/91d8274f043c3ca3a2ed754fd5f5f76b/work/3599846393_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846393_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/bb/bb9815a315ec87ef484ed90d48810312/work/3599846473_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846473_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/53/531b24a26c2debea25b1305a0f6bf42c/work/3599843963_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843963_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/fb/fbb8303af906d48eae11cfbd01d87128/work/3579426069_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426069_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/72/7215f454f1d813296c793f849e96a3cd/work/3579467443_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467443_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/af/af2c7eda82ee8c309c570b590269a28e/work/3574108920_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108920_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467507_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467507_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4f/4fc684812f770c5bee1ce39fbeff1b46/work/3599846510_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846510_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/91/9177c62843a4fefa4187f2ad37124d3f/work/3579451807_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451807_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/1c/1c604c5379fbd85fbb2cd6fcf7d3f492/work/3579450880_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579450880_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/3a/3a92277c354f2a1f473a75b8a8251b9e/work/3579451803_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451803_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/98/98c80132cafa721a441bcdad7d9c702f/work/3574155036_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155036_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846420_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846420_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e3/e3e67f51e584a246ab350d5359f82fd3/work/3599846422_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846422_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/35/356b4963a6885810b173330e31fc1fba/work/3599846454_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846454_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467462_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467462_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426073_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426073_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a2/a2afd6c9e2aba47a82613c880d4e1c6a/work/3574108755_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108755_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467464_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467464_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846439_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846439_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a6/a6b95e3e11dc6cf643717c9f3e7b8ed0/work/3579467473_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467473_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846508_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846508_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a5/a567e34021034ce1d5fec5374f002865/work/3574108938_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108938_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c8/c8df0fabf32bf22723547e587e94be42/work/3599846528_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846528_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ca/caa44bc47c384bba045ca1a46f7c3ba9/work/3599846514_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846514_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/7d/7d30dd666789a2d72db6b3c337e52c00/work/3599846416_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846416_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837394_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837394_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/1a/1ae2952b26fccf6db43e0b1cba0a73a5/work/3574108941_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108941_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a5/a58d75610bc281e49f2e1d41b9e2c547/work/3579426083_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426083_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426097_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426097_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843923_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843923_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/2b/2bc32c9440e55caa5d367be5f891d7b3/work/3579426099_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426099_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/8b/8b54aad29af01a7e3ab5c3c1881fbb96/work/3599846395_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846395_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108827_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108827_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/7b/7b24fd84591293f30a27b2401788ec4d/work/3574108766_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108766_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108793_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108793_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/aa/aa5a0b1bcfbe31f9a372e3e03dafa1f3/work/3574108786_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108786_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108826_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108826_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/06/06fca1b4d6a315b0dc252632fee0fa32/work/3599846494_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846494_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/7a/7acd901462844a278565cbb775f0403a/work/3599843905_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843905_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/3c/3c7d0c11aa590c744e5a1cc1008d0871/work/3574108759_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108759_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/45/453c68ec2183bb8825e358b2b15ea219/work/3599843937_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843937_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108891_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108891_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/30/30db3894281b6478d20d9cbb5f9d9312/work/3599836363_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599836363_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467471_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467471_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449689_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449689_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/76/76e64d2e527953e19197b6fa108f8073/work/3579491602_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579491602_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b1/b1326ff1bcf41e83a0e4c52088dcbc7d/work/3579426062_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426062_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/01/01067a12d1ca09324d2621b56272152c/work/3574108781_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108781_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155027_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155027_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846441_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846441_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/8d/8dd3107c9cab412368b6eda010f3a592/work/3599846407_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846407_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846429_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846429_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e6/e63e244c4442b9523bcd481ccd01bda3/work/3579467440_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467440_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c7/c73463b0af65103805ec63e6b2b61e09/work/3599843888_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843888_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109536_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109536_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843967_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843967_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/48/483fe34628256ba7a29aa1927a82c10b/work/3599846410_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846410_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467484_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467484_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/1e/1e25fccde49f98baa87ac3dbd709d08a/work/3579426071_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426071_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579450879_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579450879_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a9/a9e7565fc36ae3e3e41d636dd16974a0/work/3574154994_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574154994_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/94/94d8e8b9656046d755239d3ada7dbd17/work/3579426103_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426103_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155034_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155034_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837402_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837402_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108911_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108911_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/1b/1b34506a151639082f1ae739ecf16d9c/work/3574155031_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155031_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109553_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109553_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108876_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108876_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/86/8683df8298c16bc18d93b73842751bcb/work/3599846378_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846378_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/11/11ed821d4ed208ab21e9235e735f6178/work/3574108794_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108794_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467451_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467451_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109552_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109552_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108781_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108781_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/47/478f39d7f1dd32445d911e4d2b16b58e/work/3599843930_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843930_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843900_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843900_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/1f/1f30f73f2d8ef0909bd457ea1c840f51/work/3599846398_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846398_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108790_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108790_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/69/69ad0d50c3bde8fc8ddb66e2e4297c9d/work/3574108804_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108804_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846484_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846484_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426101_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426101_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/31/31dcd1cbd812dc8bfafe2c96ccbb08fe/work/3579450878_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579450878_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/24/241dcb4c07b9253af3e15609ae27e3f5/work/3574108814_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108814_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/59/599be90db0cd13f83dd7981da16a6930/work/3579426115_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426115_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/80/8032ce122031634a6c1744c49d7541e3/work/3574154986_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574154986_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/82/82517064f6cfed5440aa01d88b4d8a87/work/3574108908_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108908_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/07/071ca43f43995f9ecc495f798d316a02/work/3574155035_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155035_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108765_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108765_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/64/645f2dc28122667483a939cb2d8a4386/work/3599843927_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843927_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/8d/8df12f58ee852ac99eb4de0b13306575/work/3574108914_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108914_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574154992_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574154992_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846527_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846527_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ea/eacab10fc900a5112554153f9a869f67/work/3574108763_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108763_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155024_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155024_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/0a/0abdd84a2728a8e5afec9990779150d2/work/3599837410_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837410_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/2f/2f77cfb0c6e8d95de036e8cdd890857b/work/3599846406_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846406_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/97/97a067e1644a2cf3065903ff9e274a68/work/3574109559_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109559_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108803_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108803_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843958_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843958_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b6/b646fdce5e36b50736edebf29bb1889e/work/3574108816_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108816_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ca/ca8e8ef728cb08cb87fc9943ae568824/work/3579449691_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449691_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/8c/8cd2616b85a55ee78bbee8cbeb50e48c/work/3574108906_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108906_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467489_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467489_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/de/de493d550ac45cf6a56a482d8c0af246/work/3574108784_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108784_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449680_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449680_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843906_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843906_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e0/e027112b9ea2a591ac71f6cdc31e8cd1/work/3579467496_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467496_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108938_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108938_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108758_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108758_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/79/7934d4fc8e5358c436a36db98b88877c/work/3574154988_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574154988_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426113_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426113_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574154990_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574154990_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/be/bec110f5bfdc6b0572c0d4ecee37380b/work/3574109541_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109541_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109564_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109564_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/51/51e661794bdf86ef9a199f8724398604/work/3599846381_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846381_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467456_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467456_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846437_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846437_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108796_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108796_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579490667_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579490667_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837426_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837426_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843917_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843917_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/45/45f1d2a85928272592a6b53070b7c704/work/3579467504_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467504_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/1e/1ebc63a351379f4ebba5beccef823762/work/3574108866_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108866_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a9/a9999edfab2ebddfe73fc6204047ae7a/work/3579490667_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579490667_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/7b/7b3ed919ebe6142335734d9576e1f749/work/3599843897_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843897_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108864_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108864_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/61/615ff68fae56d9ab577ac852f8ea8f35/work/3574109539_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109539_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846440_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846440_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ef/ef5b597b170b1e32dfba523419b051ff/work/3574109530_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109530_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/39/396e93a2fa8562557aa4150df93725f4/work/3599846526_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846526_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108888_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108888_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d6/d6467978dfbe6e146916091252af42a0/work/3579449672_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449672_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837378_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837378_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109533_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109533_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467448_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467448_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449665_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449665_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/61/61d6d75c0eded464376a9152d80e87d7/work/3599846452_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846452_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449673_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449673_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/42/428c308615cd9890419be94cd8e11f36/work/3599846428_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846428_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467437_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467437_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/88/887fa86d85f67b0e413528559720b6e6/work/3574108931_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108931_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108795_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108795_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/8a/8a450b111af72dbf3797de83e1102d76/work/3574108831_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108831_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108794_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108794_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/28/28b8818f170269200050f1ba4465207d/work/3579467519_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467519_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579490326_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579490326_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109542_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109542_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108811_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108811_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426092_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426092_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/bf/bf72427b90c5eb3d649ee87b97cdc085/work/3599846440_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846440_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/60/60d64bcf4203f30645307c60a5af2cdc/work/3599843896_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843896_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/3c/3cb248e854882592429d2a70b0422ccf/work/3574109570_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109570_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108775_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108775_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/68/68b15ca7d863137d7d1dd2cf42588605/work/3599843923_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843923_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579490320_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579490320_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/07/07cad6b362f69ebfeb0834d2a1ea5cb0/work/3579426057_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426057_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108808_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108808_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/73/73f963b20ac06c03aca3dea90b0afaf1/work/3574108883_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108883_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108879_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108879_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c9/c900652d56b3d59a794bc3ba050dead3/work/3574108942_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108942_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846487_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846487_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155052_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155052_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108867_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108867_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843913_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843913_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/cc/cc6691e27c96b8c2263128567aed7917/work/3579467426_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467426_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e5/e59b7f03a8d9026a9d42c8bd9d40c9e7/work/3579467474_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467474_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843908_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843908_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/5d/5d4b4442d89d859ddf89afe6dba71126/work/3599843912_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843912_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/53/53d2424defeaac5dd1774e0eb5014705/work/3599837402_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837402_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846493_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846493_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/91/91943c39326087f54fdce4e1a6b96376/work/3574108826_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108826_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/43/43d8b8974ef6c8585774e29a0f15779d/work/3599846453_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846453_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108774_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108774_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/56/56c8f44c20e474f4ed51d4f47475dffc/work/3574155060_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155060_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/6d/6df2a133826fd4b50da2be4a45b26842/work/3599846419_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846419_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837418_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837418_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108855_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108855_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108800_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108800_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/77/77b6f7f1a19c5dbbdd0fc99eecb9d3af/work/3599846490_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846490_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426104_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426104_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b1/b156a7cb6f01c7a63b3a7208aa2c4a97/work/3574109528_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109528_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d3/d3ab239ac5baed3bd7b331539aee1692/work/3579450868_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579450868_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d2/d22431f99c22a2958a34d37930e2a28c/work/3599846451_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846451_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/49/491480d19ae76cc76ee14fdc529b62cc/work/3574154991_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574154991_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108834_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108834_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e5/e555b0915952d3100bb3d1a10d649848/work/3599837378_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837378_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108821_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108821_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/7d/7d636722c93f9e7f13fd12f01211c3f0/work/3574108837_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108837_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108940_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108940_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d6/d6f3b9c9a3bd4239ed13c49f56f22824/work/3599846471_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846471_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/81/818d8f4996b088242b601066a75b8c17/work/3574155030_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155030_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/34/340967ebdf2ca2d2fab6149224b7c3c8/work/3599837457_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837457_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/32/325bde76f91afe6d3def03d8d3c92115/work/3599846401_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846401_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467515_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467515_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/5c/5c3e4f3a60b11710d3583a7d3a047a1f/work/3574108872_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108872_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d4/d47ff0fe117eaac1ed534958278861aa/work/3574108812_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108812_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574154984_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574154984_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/22/22d91724ce4c92bc5c7abdaa627db38c/work/3574108880_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108880_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c0/c0d579881e0e0623dce9ad4edafc7121/work/3579467509_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467509_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108882_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108882_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467467_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467467_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c8/c8fc234a1e3e775af883bf4a08f155d3/work/3574108822_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108822_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108772_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108772_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/6b/6b3187eb7f86f952ee0ab5fa58070419/work/3599843918_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843918_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426054_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426054_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108801_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108801_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d3/d33920fced1411d3f5ae85631afe13b8/work/3579449670_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449670_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/6e/6ee5dd817ebd2355ac564da3f91b9298/work/3574108787_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108787_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846384_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846384_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/51/5154a08a71e82897fec40126861dc4b4/work/3579467446_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467446_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108784_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108784_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c8/c8edb05f66d3c1e94c5070f38092ef8a/work/3599846523_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846523_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/32/329a59d6f82ce344503665ddaf49ab75/work/3574108870_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108870_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4f/4f950aba1440623d26d521e8e5384a6f/work/3574108945_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108945_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/8f/8f75901108d1231866d00f52f53566c7/work/3574108879_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108879_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d9/d95aec11b5969e11e4e176bbf06888f8/work/3599846481_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846481_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e3/e32a6d1c5f066d7245a863e356d8c8a9/work/3599843939_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843939_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/94/94676110a72db56ea64f94824a6f7b74/work/3599846462_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846462_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108872_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108872_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108786_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108786_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/fe/fea19ec2569ea57b98fdc8126846ee8f/work/3579467439_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467439_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846383_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846383_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/17/17c2da15ba4e5f5c342ee7b550634231/work/3574108913_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108913_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451812_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451812_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108880_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108880_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e1/e1a55f6f18c73e186c757582219353ec/work/3579450825_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579450825_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108777_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108777_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e0/e05949cf35784ef4523b5b740255378f/work/3599843958_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843958_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d1/d1680f37a07d2077e9726bb5757446e9/work/3579449693_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449693_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426059_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426059_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843955_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843955_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467442_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467442_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846499_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846499_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/95/95cd4bfe3ebbc0f725fe587502b16340/work/3574155032_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155032_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467434_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467434_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108849_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108849_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/46/46f8ca767481a9f2d3b357d9e672a2ba/work/3579467487_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467487_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846443_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846443_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/2c/2c75eaf9766eb386370bc796ac471f46/work/3574108800_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108800_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846411_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846411_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/80/80618432994445280c347f8d50de1e8f/work/3574108881_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108881_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109559_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109559_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/28/2860b22dbab6f759bb9461cc310b5427/work/3599846441_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846441_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a8/a8855aa77167d783153f2a73170bdc2c/work/3574108806_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108806_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467520_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467520_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846479_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846479_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/fd/fde1bfb918eccdcf59422d6c9e12b48c/work/3599843946_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843946_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109544_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109544_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/94/942bda8467a7570bf3336f6fe291ada0/work/3574155021_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155021_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f2/f20d884e1bf3c93390dc316b5c4c2011/work/3579450879_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579450879_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/fe/fe19f8fec9b7334d385de635cbcd1995/work/3599837433_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837433_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109575_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109575_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b0/b05e180c702cee95d4b1f8832e8fbe70/work/3579491562_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579491562_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155028_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155028_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843954_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843954_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/bf/bfb77f491e323d8929970450818c384f/work/3579467435_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467435_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/08/08d8ed27271d37cfafedaab200bb524a/work/3574155026_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155026_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/97/97426461ae80150f1dc3eca6a2949a83/work/3579467467_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467467_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/3f/3f680d40c9d16a898b6cb947925ec3a4/work/3574155052_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155052_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/cf/cfb397bad792c40e23ffe7cb603c4181/work/3599846421_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846421_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426082_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426082_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109538_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109538_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e0/e00549c64bd1a416a02f522897484b7d/work/3579467492_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467492_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426081_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426081_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/3c/3ce06bcff5c0aaa2abf2b967aa77f663/work/3574108887_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108887_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/9c/9c800e5c2a5fc6ab1c2540c0082aec98/work/3579426056_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426056_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108859_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108859_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/0d/0d74f847ffa3776c0f83a04e446a8808/work/3599846468_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846468_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846444_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846444_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/aa/aa4d44decb0f940cc664358368147ba2/work/3579426050_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426050_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ca/ca5f27949bdca0ad80048dea737b8a53/work/3599843901_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843901_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d4/d4a41931d7def9c8469ddaeb901617c8/work/3599843907_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843907_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108773_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108773_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/15/1548eff5102b5f7ee2b932bed47e7783/work/3599846507_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846507_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/67/6721802792ec0424ecbba92d3a2cbd16/work/3574108932_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108932_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426069_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426069_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467452_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467452_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/06/06a8f67ca5c52de19eec4a9f83ae6b4a/work/3574109552_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109552_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579491578_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579491578_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/9e/9e97d056ffba452f64fe3dd503246cfa/work/3599846525_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846525_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d4/d4a99787f24ec044e5a2e6e33c752155/work/3599846387_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846387_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108931_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108931_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155026_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155026_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/6a/6a7e8f7054979930cc832f2675f51a69/work/3574108810_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108810_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108813_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108813_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a9/a9fbb0c6693e6b9e5adae8b5ec838bf4/work/3574108785_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108785_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843951_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843951_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/35/35822d1f850e7999e11a411ff6aafa22/work/3599846427_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846427_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/c6/c64b2ef64d6da18eda8409b9471e24ff/work/3574108813_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108813_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/cb/cbb1f8fad7f80914199ee3825cf07b94/work/3599846434_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846434_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/7d/7d513ae574661380c6ac991f2cbdeb7c/work/3579491594_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579491594_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b6/b627b4821bb2bb74b587d6e719a41210/work/3574109550_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109550_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ff/ffd8da9e47cc22141a245a15bacec675/work/3574109534_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109534_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451800_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451800_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846481_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846481_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843979_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843979_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/21/21f4c6d7340c346d9e2dd1f22b9d9b83/work/3599837425_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837425_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ad/adeb58a20560bd08e536213f1d7a8acd/work/3599846447_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846447_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/76/76872c2646b60aebdf5229857753df26/work/3579467465_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467465_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846381_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846381_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843939_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843939_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/09/09018cb322cd82c4c54dcb4fbf355c32/work/3574109563_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109563_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/1f/1f08dc1e34718141d49fa2e71601b8f7/work/3579467482_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467482_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e2/e2e332618e447d92e1f5a80a9476e0fa/work/3599837418_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837418_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a2/a2636d5d52cceca9a613e82c6c0f258f/work/3599843890_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843890_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/52/52f8b23f1591d51e734db22e7ee94557/work/3599846423_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846423_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/64/643b9100ea4a8af407cc03088d08d84a/work/3599846415_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846415_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/6f/6feb5751e7837ed42d1f40751f503f4b/work/3599843891_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843891_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/cb/cb3847b48bb8551d203a2271b8927ec8/work/3574109529_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109529_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837434_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837434_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/25/259e2748cd42737ff9152d8af03c31a6/work/3599837434_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837434_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426056_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426056_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467470_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467470_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ff/ff5e57d8be101ddf40bfcb9358c5ec7c/work/3599846466_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846466_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ab/ab4f25b9dc8ffc856ffac19d83ff1acd/work/3579467495_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467495_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d7/d77ed269d3e39f605b73062e706e1cfa/work/3579467516_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467516_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/aa/aa8923bd9e0d1ca4ef9af55508365d11/work/3574108765_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108765_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/85/852fabbcdf99f03e1408da13db920a06/work/3579449671_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449671_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467487_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467487_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/2e/2ea539d0a4702a6888c844299d1e6a0c/work/3574108797_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108797_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b6/b6645d34e1a0e1963723b466b8b2e1a3/work/3574108818_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108818_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ce/cea43305b9b93b1fa4c3198e1ccc3d59/work/3574108888_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108888_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e5/e5e71f2eb129dc640a2287354b4e8921/work/3579449677_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449677_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/27/273abdfc682d9db564d9a09ab31565aa/work/3579426085_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426085_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108819_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108819_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846458_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846458_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/68/683462fbf45dd0dbd84fa1e83cbb5a46/work/3574109558_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109558_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e0/e0bd28ad142a75b6ba1f734f9315de07/work/3574108767_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108767_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/41/41ff45b1477c53754f63188786e0d2b9/work/3574155038_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155038_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837441_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837441_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108871_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108871_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/e2/e2debf275fe3404c6247fa501f10aa24/work/3599846504_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846504_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579491602_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579491602_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108789_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108789_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426057_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426057_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108874_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108874_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/91/916ec7d0179a0623704c814af355910c/work/3579467499_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467499_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ed/ed6e639c11364ff5388bdb622e82c56e/work/3574155015_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155015_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/63/6331e590acfd7c7efe483c49a3f092f2/work/3599843982_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843982_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467506_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467506_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843916_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843916_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/0e/0ee13730f16ae5e1c11a4c77e10f224c/work/3599846383_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846383_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449681_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449681_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d5/d59a8bd32bd75e5bba3eb893008a29b8/work/3599846409_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846409_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426121_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426121_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/fb/fb0b101453c0be79ff7923bbc295f5bd/work/3574109562_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109562_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108943_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108943_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/45/456f8ccee56a446ecb728f9bc67861b4/work/3599846527_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846527_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/99/998960d127a9ee4fc68de84387c16662/work/3574108790_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108790_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108918_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108918_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108761_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108761_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846409_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846409_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/5d/5d59716b814ca879cdb8df92b2d57327/work/3574108922_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108922_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109530_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109530_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/bd/bd583f4737628a4448c1a1f16717add5/work/3599843938_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843938_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ef/effbacad08bf11f90712942c4158ea1f/work/3579449687_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449687_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a0/a0fdf319ad71199b07f1df8de542e721/work/3599843951_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843951_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/bc/bc1a659708f296c62971909532255745/work/3574108843_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108843_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846446_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846446_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846528_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846528_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/08/08b873ff4873a777541bf118ad859de6/work/3599846506_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846506_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/f6/f60086faaaa4635ba7f96b99ede0f7e4/work/3599846532_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846532_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108884_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108884_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ba/ba218d0a138fba0a5dff30f184d99956/work/3574108761_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108761_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/ca/ca5fabcf64e22b3043b10b39afc178e9/work/3574155034_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155034_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/9f/9fe1f6414fc7f622226c0c7674dc9135/work/3599843966_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843966_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d7/d7f877cee93e1b0dd0a50b728a6036b6/work/3579467497_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579467497_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426087_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426087_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451798_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451798_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108894_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108894_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574155018_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574155018_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843971_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843971_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/fe/fe36cee2cfbb893b0254a4605d42cf86/work/3599846512_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846512_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846406_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846406_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574109546_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574109546_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/93/93b45d528dc77bda0fc1adf480087c7f/work/3574108898_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108898_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837425_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837425_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843972_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843972_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/00/00335af7b7a3e4074dd32818a5939c22/work/3599846459_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846459_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599843947_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843947_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/79/79f52b64cbe26bda1cba5e986e27b0b5/work/3579449676_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449676_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579426106_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426106_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108771_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108771_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846394_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846394_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/3a/3ab8f3ebde43f2baaacdd65799422877/work/3599843961_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843961_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579490360_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579490360_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846530_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599846530_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579449674_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449674_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108930_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108930_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599837442_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599837442_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/4a/4ae49b7c09466a4dcf6b0101f5873dac/work/3579426060_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426060_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/cc/ccbbca499ebe73666c55061aff8e2c6a/work/3599843921_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843921_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/14/142e1773efe0670a30eb48f40df5735a/work/3579451801_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451801_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108908_sv1_basic_stats.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3574108908_sv1_basic_stats.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/d0/d03fd8c54be113c3cb3ed65b03f21770/work/3579426112_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579426112_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/a7/a75f6614861946c81c03cad13abe14b7/work/3599843922_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3599843922_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/45/459795f3be75fd06fc1904ddd6df79c7/work/3579449688_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579449688_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/37/37f8866a663e93aa43672243fcc70c1b/work/3579451797_sv1_multicov_output.tsv" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/3579451797_sv1_multicov_output.tsv"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/2b/2b7c0d132c92047c333171bb7ed713cb/inputs/tmpx7ii9533" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/tmpx7ii9533"
cp ${S5_CP_FLAGS} "s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/2b/2b7c0d132c92047c333171bb7ed713cb/inputs/tmpgav0c_6c" "/tmp/miniwdl_task/work/_miniwdl_inputs/0/tmpgav0c_6c"
STAGE_FILES
    local rc=$?
    if [[ $rc -ne 0 ]]; then return $rc; fi
# no directories to sync
    return 0
}
STAGE_RET=1
for _stage_attempt in 1 2 3; do
    # `|| STAGE_RET=$?` suspends set -e inside _do_stage and captures the code
    STAGE_RET=0
    _do_stage || STAGE_RET=$?
    [[ $STAGE_RET -eq 0 ]] && break
    [[ $_stage_attempt -lt 3 ]] && {
        log "Stage attempt $_stage_attempt/3 failed (ret=$STAGE_RET), retrying in ~30s..."
        sleep $((30 + RANDOM % 10))
    }
done
[[ $STAGE_RET -ne 0 ]] && { log "Stage failed after 3 attempts, aborting"; exit $STAGE_RET; }

STAGE_MS=$(( $(_ms) - _START_MS ))
log "Staging completed (1539 inputs, ${STAGE_MS}ms) s5cmd=workers:$_s5_numworkers,concurrency:$_s5_concurrency,cpus:$POD_CPUS"

# Everything after staging is best-effort — metrics collection and task command
# failures must be captured, not abort the script.
set +e

# Start metrics collection (snapshots /proc, launches background memory poller)
miniwdl_trace_start

cd "$TASK_DIR/work"
# fd-swap tee: stdout/stderr captured to files AND passed to outer layer for
# kubectl logs. Background + wait allows SIGTERM to interrupt immediately.
OUT="$TASK_DIR/stdout.txt"
ERR="$TASK_DIR/stderr.txt"

(set -o pipefail; (/bin/bash "$TASK_DIR/command" | tee "$OUT") 3>&1 1>&2 2>&3 | tee "$ERR") &
pid=$!

# Launch mem_watch background poller on the task subshell, not the wrapper PID.
# Must start AFTER task so $pid is available (matches Nextflow's nxf_trace_linux pattern).
if [ "${METRICS_ENABLED:-0}" = "1" ]; then
    mem_fd=$(miniwdl_fd)
    eval "exec $mem_fd> >(miniwdl_mem_watch $pid $MEM_FILE)"
    mem_proc=$!
    trap 'kill $mem_proc 2>/dev/null' ERR
fi

wait $pid; EXIT_CODE=$?
TASK_MS=$(( $(_ms) - _START_MS - STAGE_MS ))
log "Task finished exit_code=$EXIT_CODE (${TASK_MS}ms)"

exit $EXIT_CODE