work/3574108756_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108756_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108756_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108756_sv1	39344336	54417	0.001383	30094503	0.235099	15015772	0.752228	0.245963	0.877719	0.122281	222	329	490	14576409	0.97074	12793993	1782416	22637941	7402145	361.143385	126.886826	9249833	0.978112	0.942201	0.942201	5893487850	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	224047	0.15195	0.0	0.152352	0.19555	0.263927	0.35605	0.842084	1.180509	1.012854	0.903854	1.0113	1.010438	0.978895	1.124003	1.045972	0.91592	0.60323	0.303096	0.36661	0.0	0.0	0.0	318.20652	0.314758	2258.0	90.0	128.0	320.0	525.0	598.0	0.015762	0.998155	6347018	6266113	1.00	0.984238	6366463	0.0066	646	-1650.2706	102.7542	6388832

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