work/3574108757_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108757_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108757_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108757_sv1	38251038	52257	0.001366	29276823	0.234614	14608143	0.752465	0.24575	0.8739	0.1261	216	325	486	14201410	0.972157	12410609	1790801	22029778	7194788	356.679394	127.58744	8974215	0.978578	0.943657	0.943657	5729817150	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	216366	0.181187	0.0	0.170481	0.220719	0.27808	0.382185	0.875401	1.212024	1.023262	0.904496	0.997541	0.990232	0.958957	1.097188	1.022023	0.902654	0.603155	0.301665	0.349197	0.0	0.0	0.0	308.256116	0.312634	1489.0	88.0	125.0	311.0	505.0	576.0	0.017852	0.998507	6346437	6252809	1.00	0.982148	6366463	0.0069	621	-1609.0991	114.1297	6388832

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