work/3574108758_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108758_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108758_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108758_sv1	28973808	46742	0.001613	22182730	0.234387	11063663	0.747137	0.250755	0.877492	0.122508	234	338	493	10719054	0.968852	9405879	1313175	16573547	5562441	368.474566	123.182053	6791078	0.977789	0.941756	0.941756	4339059900	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	163980	0.164838	0.0	0.185443	0.230239	0.27667	0.382772	0.868809	1.205052	1.024053	0.905147	1.004035	0.996888	0.960225	1.098045	1.017547	0.873169	0.571961	0.293424	0.331845	0.0	0.0	0.0	237.07286	0.322059	1150.0	64.0	92.0	239.0	394.0	451.0	0.066155	0.999589	6344688	5945291	1.00	0.933845	6366463	0.0038	676	-957.8577	27.3936	6388832

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