work/3574108759_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108759_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108759_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108759_sv1	31548668	44508	0.001411	24642772	0.218897	12295040	0.760617	0.237577	0.877178	0.122822	208	315	472	11960778	0.972813	10491737	1469041	18743715	5854549	345.770034	124.350143	6905896	0.978152	0.94293	0.94293	4725624000	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	182595	0.154687	0.0	0.149268	0.201449	0.261943	0.365638	0.851913	1.187314	1.020748	0.907199	1.006417	1.002597	0.971048	1.111631	1.03464	0.911276	0.617486	0.287839	0.364549	0.0	0.0	0.0	259.315757	0.311174	1335.0	74.0	107.0	260.0	426.0	486.0	0.037176	0.998935	6345758	6129782	1.00	0.962824	6366463	0.0151	654	-2313.9344	317.2197	6388832

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