work/3574108763_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108763_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108763_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108763_sv1	35950982	58030	0.001614	27188295	0.24374	13560449	0.752118	0.245747	0.877255	0.122745	221	327	485	13132596	0.968448	11520633	1611963	20448810	6681455	358.507727	124.841675	8762687	0.977624	0.94168	0.94168	5383942800	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	201555	0.154962	0.0	0.154523	0.193153	0.261635	0.361803	0.851712	1.194317	1.019908	0.908053	1.009046	1.005778	0.970793	1.101736	1.021342	0.881495	0.582518	0.279571	0.321337	0.0	0.0	0.0	288.341312	0.315753	1893.0	81.0	116.0	290.0	475.0	544.0	0.025931	0.998542	6345844	6201376	1.00	0.974069	6366463	0.0116	694	-2166.0059	245.5748	6388832

2 rows