work/3574108766_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108766_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108766_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108766_sv1	37727772	51380	0.001362	29270297	0.224171	14605096	0.750505	0.24774	0.868457	0.131543	212	325	482	14211162	0.973028	12341778	1869384	21967503	7251414	354.865382	125.020714	8457475	0.97854	0.943243	0.943243	5651458800	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	218889	0.18536	0.0	0.172864	0.230699	0.278599	0.384022	0.875728	1.207302	1.023194	0.904182	0.999924	0.988592	0.955213	1.098465	1.038643	0.936186	0.613333	0.313951	0.376551	0.0	0.0	0.0	308.034676	0.314696	1537.0	86.0	123.0	311.0	505.0	575.0	0.019654	0.998102	6345515	6241335	1.00	0.980346	6366463	0.0076	681	-1829.9663	142.6275	6388832

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