work/3574108770_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108770_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108770_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108770_sv1	30730100	45682	0.001487	23855736	0.223701	11900646	0.748677	0.249408	0.871359	0.128641	215	330	495	11559219	0.97131	10072225	1486994	17860249	5949805	360.45941	130.828522	6874364	0.977694	0.941334	0.941334	4602662700	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	178786	0.154034	0.0	0.154547	0.187053	0.265947	0.371513	0.853687	1.195542	1.018398	0.906349	1.006038	1.004513	0.97199	1.105585	1.01922	0.89288	0.60236	0.278435	0.328606	0.0	0.0	0.0	248.858444	0.319355	1443.0	68.0	98.0	251.0	412.0	467.0	0.052821	0.999818	6346685	6030182	1.00	0.947179	6366463	0.0046	542	-938.0963	35.0709	6388832

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