work/3574108772_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108772_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108772_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108772_sv1	39781750	58488	0.00147	30247380	0.239667	15089997	0.741582	0.256484	0.871584	0.128416	225	342	509	14602365	0.967685	12727187	1875178	22430918	7757974	372.059545	132.209503	9534370	0.977571	0.940603	0.940603	5958489300	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	225164	0.140292	0.0	0.153444	0.220371	0.278066	0.36806	0.860477	1.204272	1.022462	0.907049	1.00591	1.001968	0.964384	1.096011	1.009319	0.867558	0.581767	0.280925	0.404933	0.0	0.0	0.0	316.545528	0.321158	1565.0	85.0	122.0	319.0	522.0	593.0	0.020356	0.998053	6347057	6236868	1.00	0.979644	6366463	0.0089	685	-2119.9531	169.6452	6388832

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