work/3574108779_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108779_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108779_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108779_sv1	35172614	46769	0.00133	27200504	0.226657	13572636	0.753724	0.244556	0.871513	0.128487	220	324	476	13215489	0.973686	11517469	1698020	20501682	6652053	353.435419	120.850357	7972110	0.978707	0.943949	0.943949	5268876750	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	204388	0.171154	0.0	0.137824	0.214254	0.268568	0.375051	0.870119	1.206809	1.029904	0.909632	1.002747	0.990624	0.951192	1.092607	1.017527	0.903004	0.59083	0.301514	0.326093	0.0	0.0	0.0	290.360075	0.320063	1953.0	79.0	114.0	292.0	479.0	545.0	0.028089	0.998725	6345977	6187634	1.00	0.971911	6366463	0.0043	566	-1126.2868	42.7875	6388832

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