work/3574108780_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108780_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108780_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108780_sv1	34280634	48667	0.00142	26075392	0.239355	13008913	0.741962	0.256171	0.871963	0.128037	242	343	493	12616391	0.969827	11001021	1615370	19346961	6679764	372.546914	119.384575	8205242	0.978073	0.941985	0.941985	5134795050	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	194325	0.178158	0.0	0.179994	0.240746	0.286328	0.377589	0.873895	1.210557	1.029366	0.912678	1.002729	0.990093	0.955626	1.077868	1.006521	0.879098	0.593081	0.28088	0.385702	0.0	0.0	0.0	279.093187	0.326365	1020.0	73.0	105.0	282.0	461.0	520.0	0.040362	0.999147	6345224	6109499	1.00	0.959638	6366463	0.0109	753	-2350.6741	246.3756	6388832

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