work/3574108783_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108783_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108783_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108783_sv1	38557370	57539	0.001492	29581319	0.232797	14757390	0.752135	0.24592	0.870826	0.129174	219	323	478	14351720	0.972511	12497849	1853871	22249147	7274633	353.996846	122.935043	8976051	0.978458	0.943322	0.943322	5774974650	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	233877	0.071133	0.0	0.086347	0.117154	0.232711	0.355918	0.847732	1.189528	0.990813	0.904673	1.01099	1.019487	0.986484	1.124599	1.057628	0.911927	0.624988	0.323654	0.378282	0.0	0.0	0.0	314.392968	0.356808	1510.0	71.0	112.0	311.0	542.0	616.0	0.034406	0.998378	6364904	6147417	1.00	0.965594	6366463	0.0073	675	-1866.7498	143.8909	6388832

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