work/3574108784_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108784_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108784_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108784_sv1	35612662	52312	0.001469	28082922	0.211434	14010809	0.753155	0.244983	0.870898	0.129102	221	324	478	13664215	0.975262	11900131	1764084	21150779	6879831	354.416559	121.520363	7529740	0.978478	0.943333	0.943333	5334052500	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	210997	0.190128	0.0	0.188798	0.227594	0.27347	0.376031	0.864817	1.203755	1.027552	0.909936	1.006201	0.989542	0.954045	1.094769	1.022922	0.913421	0.597278	0.302128	0.398869	0.0	0.0	0.0	298.616957	0.317926	1668.0	81.0	118.0	301.0	489.0	554.0	0.023948	0.998688	6345036	6213997	1.00	0.976052	6366463	0.0114	662	-2211.2186	237.6695	6388832

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