work/3574108786_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108786_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108786_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108786_sv1	23282450	31665	0.00136	17525824	0.247252	8742893	0.697802	0.300391	0.872908	0.127092	247	402	604	8134394	0.930401	7100580	1033814	12229564	5264595	430.436192	159.912048	5756626	0.970132	0.919527	0.919527	3487617750	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	126325	0.142044	0.0	0.155197	0.193035	0.340943	0.346066	0.809039	1.125839	0.986836	0.908954	1.030633	1.079933	1.042452	1.117753	1.010632	0.748888	0.554612	0.255342	0.352481	0.0	0.0	0.0	172.994163	0.334971	1300.0	42.0	63.0	174.0	291.0	334.0	0.171882	0.999969	6342557	5272182	1.00	0.828118	6366463	0.0123	680	-1416.8924	159.3156	6388832

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