work/3574108787_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108787_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108787_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108787_sv1	27162114	38845	0.00143	20716444	0.237304	10334333	0.707287	0.290838	0.870626	0.129374	239	384	580	9704027	0.939009	8448581	1255446	14652462	6025137	413.476098	154.570923	6445670	0.97123	0.922686	0.922686	4068490350	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	151961	0.163724	0.0	0.149658	0.213798	0.333943	0.344881	0.799724	1.119255	0.984738	0.908196	1.032523	1.078879	1.040798	1.131662	1.027971	0.7949	0.570186	0.260415	0.364581	0.0	0.0	0.0	206.146112	0.333495	1236.0	51.0	76.0	206.0	349.0	403.0	0.111674	0.999921	6345238	5655494	1.00	0.888326	6366463	0.0065	730	-1229.9982	72.0395	6388832

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