work/3574108789_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108789_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108789_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108789_sv1	36198112	65094	0.001798	28339934	0.217088	14132540	0.748211	0.249493	0.865499	0.134501	213	319	476	13709187	0.970044	11865284	1843903	21204238	7070602	350.087738	124.107292	7858178	0.977678	0.941572	0.941572	5419952700	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	209814	0.153875	0.0	0.174421	0.201759	0.266244	0.372453	0.868163	1.200792	1.022734	0.906672	1.003338	0.997342	0.958905	1.09783	1.032336	0.914553	0.618663	0.302379	0.346219	0.0	0.0	0.0	296.988333	0.31452	1405.0	83.0	119.0	300.0	487.0	553.0	0.022817	0.999034	6346975	6221202	1.00	0.977183	6366463	0.0079	649	-1814.9906	131.1936	6388832

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