work/3574108793_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108793_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108793_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108793_sv1	31712118	47207	0.001489	24731724	0.220118	12337806	0.749565	0.248526	0.868233	0.131767	214	321	481	11978270	0.970859	10399934	1578336	18538029	6146488	352.599289	125.741379	6980394	0.977646	0.941515	0.941515	4749736650	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	183461	0.176551	0.0	0.166077	0.212536	0.27243	0.369091	0.862722	1.204314	1.023599	0.909158	1.004848	0.996032	0.959215	1.095716	1.022516	0.891686	0.610223	0.291116	0.359086	0.0	0.0	0.0	259.363862	0.317597	1407.0	71.0	103.0	261.0	425.0	486.0	0.043637	0.998739	6346540	6088648	1.00	0.956363	6366463	0.0105	680	-1874.9828	198.1586	6388832

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