work/3574108796_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108796_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108796_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108796_sv1	31165008	44454	0.001426	23524661	0.245158	11735822	0.732472	0.265638	0.865302	0.134698	222	344	515	11296219	0.962542	9774638	1521581	17231155	6249052	374.082058	135.156784	7640347	0.975884	0.93631	0.93631	4668083100	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	185219	0.073213	0.0	0.115413	0.124525	0.235053	0.33492	0.811451	1.14963	0.978978	0.907807	1.023269	1.054954	1.023914	1.140728	1.049649	0.862436	0.593842	0.301715	0.343696	0.0	0.0	0.0	241.828865	0.361961	1186.0	53.0	84.0	238.0	422.0	485.0	0.082257	0.999446	6363303	5842777	1.00	0.917743	6366463	0.0023	615	-778.6236	14.4006	6388832

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