work/3574108797_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108797_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108797_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108797_sv1	32754304	46078	0.001407	25188349	0.230991	12566746	0.737966	0.260204	0.86866	0.13134	238	343	499	12158856	0.967542	10561917	1596939	18588157	6554114	373.556075	123.829926	7565955	0.977317	0.939728	0.939728	4906233900	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	186110	0.168308	0.0	0.164932	0.215309	0.292028	0.375639	0.869073	1.201876	1.02083	0.908808	1.005177	1.002111	0.963629	1.090828	1.01447	0.871369	0.593598	0.290181	0.368444	0.0	0.0	0.0	266.662383	0.324492	1625.0	70.0	101.0	270.0	441.0	501.0	0.046991	0.999427	6346567	6067296	1.00	0.953009	6366463	0.0093	726	-1952.1983	181.0866	6388832

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