work/3574108798_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108798_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108798_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108798_sv1	37315950	60452	0.00162	29346828	0.213558	14638409	0.745383	0.252558	0.866036	0.133964	218	325	483	14191637	0.969479	12290467	1901170	21874614	7411762	355.819443	125.050934	7969122	0.976923	0.93898	0.93898	5588324700	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	230712	0.072207	0.0	0.107036	0.116968	0.2437	0.348266	0.834888	1.174128	0.990541	0.906914	1.013859	1.03063	0.999402	1.123942	1.057218	0.898442	0.626924	0.327297	0.387368	0.0	0.0	0.0	307.786485	0.354476	1529.0	70.0	110.0	305.0	527.0	601.0	0.035983	0.998176	6365804	6137377	1.00	0.964017	6366463	0.0131	626	-2509.9473	307.0677	6388832

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