work/3574108814_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108814_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108814_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108814_sv1	37413276	52556	0.001405	29109581	0.221945	14524185	0.745384	0.25281	0.869858	0.130142	235	337	490	14157708	0.974768	12315202	1842506	21697819	7359206	367.341547	120.852226	8303695	0.978762	0.943381	0.943381	5604108000	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	230510	0.091147	0.0	0.099164	0.130617	0.23755	0.365392	0.863857	1.206257	0.999867	0.908973	1.003919	1.006758	0.972208	1.105584	1.039884	0.913452	0.620293	0.317928	0.425351	0.0	0.0	0.0	311.111296	0.361181	1819.0	68.0	109.0	307.0	535.0	606.0	0.038023	0.997774	6364174	6124392	1.00	0.961977	6366463	0.0162	671	-3031.2674	469.7152	6388832

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