work/3574108818_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108818_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108818_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108818_sv1	39743892	58164	0.001463	31848789	0.198649	15891182	0.778679	0.219495	0.867072	0.132928	197	281	407	15641530	0.98429	13562338	2079192	24799982	6990643	307.908269	101.78331	7895103	0.98123	0.951702	0.951702	5952859200	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	251880	0.081945	0.0	0.110586	0.117134	0.209755	0.37035	0.879291	1.223126	1.009627	0.90963	0.993439	0.981285	0.946408	1.103972	1.066936	0.99972	0.67866	0.361309	0.361195	0.0	0.0	0.0	344.833357	0.342288	1745.0	84.0	130.0	343.0	580.0	658.0	0.020797	0.99597	6366084	6234057	1.00	0.979203	6366463	0.0056	717	-1894.2308	90.7661	6388832

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