work/3574108821_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108821_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108821_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108821_sv1	40386294	56541	0.0014	31307506	0.224799	15620946	0.752965	0.245229	0.872967	0.127033	214	323	484	15174047	0.971391	13246449	1927598	23573449	7677516	354.683784	126.958313	9078788	0.97803	0.941922	0.941922	6049462950	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	235018	0.175199	0.0	0.17793	0.232078	0.276589	0.364832	0.853263	1.192983	1.020513	0.90898	1.007015	1.002736	0.964991	1.104332	1.03299	0.91172	0.614339	0.28897	0.383955	0.0	0.0	0.0	329.700025	0.313364	1835.0	92.0	132.0	333.0	538.0	609.0	0.014229	0.997845	6346532	6275873	1.00	0.985771	6366463	0.0044	609	-1329.2276	56.3788	6388832

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