work/3574108822_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108822_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108822_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108822_sv1	38156204	54502	0.001428	29464949	0.227781	14700865	0.752204	0.245946	0.870675	0.129325	216	323	481	14302259	0.972886	12452622	1849637	22163666	7246781	353.98342	125.084259	8691255	0.978832	0.944025	0.944025	5715255300	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	219314	0.149701	0.0	0.169964	0.211223	0.278594	0.382254	0.895065	1.228177	1.031836	0.909194	0.994408	0.980056	0.938399	1.072398	1.015217	0.911396	0.60635	0.294912	0.34241	0.0	0.0	0.0	311.048486	0.312722	1637.0	87.0	125.0	315.0	502.0	567.0	0.018431	0.998755	6346474	6249120	1.00	0.981569	6366463	0.0052	612	-1372.8973	63.8962	6388832

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