work/3574108825_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108825_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108825_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108825_sv1	39249046	59775	0.001523	30497428	0.222977	15214283	0.750545	0.247495	0.868746	0.131254	215	322	480	14789400	0.972073	12848233	1941167	22889703	7547950	352.78674	124.738625	8751618	0.977896	0.94183	0.94183	5878390650	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	226961	0.166131	0.0	0.166942	0.208833	0.267687	0.368991	0.871334	1.210344	1.025111	0.906508	1.001105	0.993354	0.952689	1.09524	1.025148	0.906395	0.612168	0.302278	0.338746	0.0	0.0	0.0	321.572568	0.313154	1608.0	90.0	129.0	325.0	524.0	592.0	0.015585	0.998593	6345942	6267242	1.00	0.984415	6366463	0.0109	656	-2323.4855	230.8907	6388832

2 rows