work/3574108826_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108826_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108826_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108826_sv1	37100812	55821	0.001505	28998506	0.218386	14466577	0.740196	0.257879	0.866197	0.133803	233	336	489	14005816	0.96815	12131800	1874016	21464590	7478095	365.376331	121.264374	8102306	0.976982	0.938661	0.938661	5556748650	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	227209	0.106184	0.0	0.116888	0.135299	0.250677	0.347677	0.833248	1.176291	0.989986	0.909195	1.015977	1.026109	0.995335	1.126424	1.057628	0.904075	0.620207	0.315493	0.375069	0.0	0.0	0.0	307.271722	0.360462	1442.0	68.0	108.0	304.0	532.0	601.0	0.038488	0.998814	6365679	6121429	1.00	0.961512	6366463	0.0145	720	-2902.6607	430.4785	6388832

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