work/3574108829_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108829_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108829_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108829_sv1	36912112	65220	0.001767	28690501	0.222735	14307894	0.754391	0.243336	0.867372	0.132628	210	313	467	13924911	0.973233	12078082	1846829	21643863	6981418	343.700057	121.717636	8221611	0.978488	0.943854	0.943854	5527033800	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	226898	0.0884	0.0	0.106423	0.114873	0.229951	0.35313	0.84105	1.184501	0.994528	0.911468	1.012727	1.018747	0.986204	1.118542	1.051424	0.918469	0.626831	0.314364	0.386212	0.0	0.0	0.0	302.660688	0.353411	1244.0	69.0	109.0	300.0	520.0	590.0	0.037095	0.99838	6364689	6130296	1.00	0.962905	6366463	0.0084	664	-1880.9476	146.9258	6388832

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