work/3574108830_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108830_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108830_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108830_sv1	34873028	48524	0.001391	27347327	0.215803	13644980	0.761314	0.236912	0.868552	0.131448	213	308	450	13341832	0.977783	11588069	1753763	20819901	6478902	337.018148	113.681831	7525701	0.979731	0.947044	0.947044	5223675600	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	205026	0.16904	0.0	0.157649	0.207488	0.253524	0.38103	0.882297	1.223455	1.032618	0.910622	0.998258	0.974194	0.940791	1.080771	1.026516	0.926196	0.615443	0.302671	0.317121	0.0	0.0	0.0	293.3189	0.311729	1904.0	83.0	118.0	296.0	477.0	541.0	0.023246	0.99875	6346659	6218470	1.00	0.976754	6366463	0.0045	686	-1330.7079	56.7766	6388832

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