work/3574108831_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108831_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108831_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108831_sv1	37138536	51206	0.001379	29896361	0.195004	14918192	0.757566	0.240721	0.87503	0.12497	224	324	473	14545807	0.975038	12728015	1817792	22648481	7196674	353.661955	118.654083	7242175	0.979039	0.94468	0.94468	5563099500	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	220984	0.164217	0.0	0.178184	0.219954	0.266596	0.379578	0.890109	1.226702	1.026154	0.905097	0.995862	0.980349	0.941551	1.087115	1.027143	0.923394	0.618938	0.287803	0.418161	0.0	0.0	0.0	321.678229	0.316959	1742.0	88.0	126.0	326.0	523.0	591.0	0.017233	0.997945	6346508	6256747	1.00	0.982767	6366463	0.0121	691	-2699.308	330.8576	6388832

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