work/3574108838_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108838_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108838_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108838_sv1	39017300	59690	0.00153	31631958	0.189284	15781514	0.764065	0.234048	0.877645	0.122355	215	315	465	15377397	0.974393	13495891	1881506	24168881	7403387	345.169767	118.89399	7385342	0.978471	0.943328	0.943328	5843641500	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	236255	0.16926	0.0	0.158831	0.20869	0.263255	0.366791	0.864527	1.197356	1.019034	0.906108	1.002474	0.99519	0.961194	1.109321	1.049544	0.939875	0.630296	0.291764	0.34975	0.0	0.0	0.0	339.797147	0.315274	1867.0	94.0	135.0	344.0	557.0	633.0	0.012897	0.997362	6344262	6284357	1.00	0.987103	6366463	0.0087	570	-1764.8554	149.9915	6388832

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