work/3574108842_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108842_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108842_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108842_sv1	36174172	54117	0.001496	29138543	0.194493	14537639	0.7665	0.231642	0.87455	0.12545	215	308	448	14200044	0.976778	12418651	1781393	22334701	6749725	337.002092	112.028908	7035629	0.979511	0.946638	0.946638	5418008250	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	215513	0.183768	0.0	0.176365	0.222559	0.263268	0.381174	0.885961	1.23385	1.032495	0.909263	0.995292	0.976487	0.934452	1.0756	1.018803	0.916006	0.607584	0.304456	0.348376	0.0	0.0	0.0	315.899341	0.311899	1793.0	90.0	127.0	320.0	510.0	578.0	0.016203	0.99768	6346730	6263307	1.00	0.983797	6366463	0.0058	563	-1389.8211	73.8018	6388832

2 rows