work/3574108844_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108844_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108844_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108844_sv1	33059078	47941	0.00145	27143623	0.178936	13543497	0.765307	0.232927	0.874799	0.125201	217	312	455	13240060	0.977595	11582388	1657672	20773212	6322470	340.99514	113.886131	5915455	0.979421	0.946033	0.946033	4951670550	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	213506	0.077038	0.0	0.102398	0.113808	0.219235	0.357984	0.859149	1.20413	0.996777	0.903599	1.003702	1.003918	0.975316	1.119879	1.064938	0.942147	0.628152	0.31485	0.333033	0.0	0.0	0.0	294.146186	0.354914	1695.0	68.0	106.0	291.0	502.0	575.0	0.041308	0.997988	6364288	6103476	1.00	0.958692	6366463	0.0071	720	-1908.3058	130.5794	6388832

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