work/3574108847_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108847_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108847_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108847_sv1	29061074	44683	0.001538	23554696	0.189476	11750509	0.766487	0.231616	0.872675	0.127325	215	306	442	11506804	0.97926	10041695	1465109	18054363	5455650	334.231115	109.415718	5506378	0.979756	0.947196	0.947196	4352458650	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	175391	0.179983	0.0	0.168495	0.20317	0.249767	0.389232	0.914222	1.246523	1.031252	0.902509	0.986676	0.96308	0.927155	1.076984	1.031915	0.947364	0.630978	0.306824	0.308543	0.0	0.0	0.0	254.909091	0.30889	1060.0	73.0	104.0	259.0	407.0	463.0	0.041222	0.998777	6345921	6104026	1.00	0.958778	6366463	0.0158	658	-2373.1396	334.3742	6388832

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