work/3574108849_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108849_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108849_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108849_sv1	30041258	42723	0.001422	24246806	0.192883	12097637	0.738415	0.259823	0.877105	0.122895	216	348	528	11566824	0.956123	10145321	1421503	17904196	6299887	377.890926	142.126541	5794452	0.975073	0.933415	0.933415	4499780250	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	177490	0.162557	0.0	0.154889	0.222877	0.295375	0.356823	0.828451	1.158552	1.000037	0.904484	1.01687	1.039818	1.003375	1.127553	1.036499	0.862281	0.59495	0.285095	0.390545	0.0	0.0	0.0	248.547137	0.323261	1414.0	66.0	96.0	250.0	413.0	472.0	0.05735	0.999516	6345018	6001347	1.00	0.94265	6366463	0.0034	604	-860.5908	26.7511	6388832

2 rows