work/3574108852_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108852_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108852_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108852_sv1	39360200	51135	0.001299	28865817	0.266624	14403416	0.749613	0.248615	0.877896	0.122104	231	341	503	13970791	0.969964	12264902	1705889	21638202	7176480	372.412522	128.662613	10494383	0.979107	0.944325	0.944325	5896359750	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	226773	0.091589	0.0	0.13541	0.135562	0.24881	0.363717	0.856367	1.194189	0.998304	0.905367	1.004766	1.01336	0.983999	1.117361	1.046299	0.899943	0.608284	0.322593	0.350567	0.0	0.0	0.0	308.451864	0.365455	1512.0	66.0	106.0	304.0	536.0	612.0	0.040805	0.99821	6365140	6106678	1.00	0.959195	6366463	0.0092	721	-2249.803	209.9676	6388832

2 rows