work/3574108853_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108853_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108853_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108853_sv1	29189692	35405	0.001213	22286145	0.236506	11122151	0.764158	0.234253	0.877176	0.122824	216	320	475	10888998	0.979037	9551566	1337432	17030144	5220596	351.148595	123.166336	6903547	0.980681	0.949129	0.949129	4373143050	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	176898	0.074907	0.0	0.103468	0.117894	0.213895	0.366023	0.8769	1.22262	1.005379	0.9014	0.99521	0.9909	0.968247	1.107398	1.043714	0.922917	0.615748	0.311175	0.375073	0.0	0.0	0.0	238.675563	0.359125	1541.0	53.0	84.0	236.0	411.0	470.0	0.083219	0.999377	6361844	5836650	1.00	0.916781	6366463	0.0059	614	-1176.8526	71.5712	6388832

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