work/3574108862_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108862_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108862_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108862_sv1	36860710	47022	0.001276	27930966	0.242256	13938082	0.752672	0.245644	0.880498	0.119502	238	345	502	13592709	0.975221	11968348	1624361	21022866	6861078	375.74845	125.148994	8929744	0.979779	0.946134	0.946134	5522053200	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	209337	0.161044	0.0	0.169587	0.204517	0.261339	0.383336	0.886369	1.229437	1.029516	0.899889	0.993889	0.977607	0.944302	1.093586	1.021921	0.916209	0.606641	0.301583	0.384454	0.0	0.0	0.0	302.020809	0.329689	1978.0	79.0	112.0	305.0	501.0	574.0	0.029797	0.998304	6346990	6176764	1.00	0.970203	6366463	0.0067	593	-1526.2738	96.7802	6388832

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