work/3574108863_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108863_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108863_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108863_sv1	30585052	45624	0.001492	23383850	0.235448	11664897	0.757274	0.240775	0.876436	0.123564	219	327	485	11374930	0.975142	9969394	1405536	17707977	5630249	358.009161	125.965454	7201202	0.979713	0.946693	0.946693	4580914200	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	175079	0.184541	0.0	0.171139	0.215549	0.267072	0.373974	0.876591	1.221847	1.034981	0.909834	0.997817	0.979397	0.941404	1.084243	1.021991	0.899879	0.602334	0.28042	0.360835	0.0	0.0	0.0	249.558832	0.319857	1220.0	67.0	97.0	252.0	410.0	469.0	0.055345	0.999627	6346018	6014113	1.00	0.944655	6366463	0.0026	715	-973.7074	20.8755	6388832

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