work/3574108872_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108872_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108872_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108872_sv1	37441340	46005	0.001229	28455985	0.239985	14201276	0.75722	0.241163	0.875259	0.124741	220	329	488	13877548	0.977204	12146451	1731097	21547449	6862531	360.052316	126.380112	8985355	0.980533	0.948007	0.948007	5609300250	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	212820	0.130169	0.0	0.141543	0.202983	0.256599	0.373092	0.880605	1.221784	1.028945	0.899852	0.994371	0.979677	0.951508	1.098655	1.029215	0.921375	0.614832	0.298493	0.362284	0.0	0.0	0.0	304.039028	0.322167	1541.0	82.0	118.0	307.0	501.0	573.0	0.02433	0.998396	6346318	6211570	1.00	0.97567	6366463	0.0063	681	-1575.1373	97.1382	6388832

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