work/3574108873_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108873_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108873_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108873_sv1	41853424	54395	0.0013	30599519	0.268889	15268545	0.753083	0.245139	0.874729	0.125271	219	329	491	14814820	0.970284	12958950	1855870	23043989	7501135	360.861118	128.102692	11253905	0.979146	0.945041	0.945041	6269854350	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	226445	0.130421	0.0	0.144287	0.205375	0.273465	0.376983	0.886743	1.226735	1.030296	0.902935	0.996093	0.984299	0.94543	1.083443	1.014829	0.890938	0.595997	0.28986	0.361281	0.0	0.0	0.0	325.219901	0.320682	1594.0	88.0	126.0	329.0	534.0	609.0	0.017575	0.99775	6346572	6254573	1.00	0.982425	6366463	0.0109	705	-2297.7233	246.3944	6388832

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