work/3574108876_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3574108876_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3574108876_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3574108876_sv1	36114070	48066	0.001331	26921319	0.254548	13432837	0.753369	0.244845	0.875266	0.124734	224	334	494	13092131	0.974636	11459099	1633032	20281694	6591559	364.662683	127.353203	9192751	0.979737	0.946396	0.946396	5409900600	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	213298	0.06591	0.0	0.095154	0.124768	0.233804	0.358821	0.863924	1.210579	1.002057	0.904979	0.999346	1.00412	0.971231	1.112046	1.047032	0.916439	0.611768	0.320756	0.384109	0.0	0.0	0.0	287.260788	0.361778	1528.0	63.0	100.0	283.0	497.0	567.0	0.048752	0.999046	6364380	6056085	1.00	0.951248	6366463	0.0105	692	-2222.9125	225.2197	6388832

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